Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060137.seq
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ...    29   3.0  
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr...    29   3.0  
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra...    29   3.9  
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra...    29   3.9  
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    28   5.2  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    28   6.8  
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains...    28   6.8  
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    27   9.0  
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot...    27   9.0  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    27   9.0  

>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 815

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 371 DNSKVIIVEGPVAAGKTAFAASLADD 448
           DNS V++V GP   GKT     L DD
Sbjct: 188 DNS-VVVVSGPPGCGKTTLVTKLCDD 212


>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
           protein-related similar to TATA box-binding
           protein-interacting protein SP:O35753 from [ Mus
           musculus]
          Length = 458

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 380 KVIIVEGPVAAGKTAFAASLADDLGMK 460
           K +++ GP   GKTA A  ++ +LG K
Sbjct: 67  KALLLAGPPGTGKTALALGISQELGSK 93


>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 459

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 371 DNSKVIIVEGPVAAGKTAFAASLADDL 451
           +  KVI++ GP  AGK+  A  LA  L
Sbjct: 48  EKEKVIVISGPTGAGKSRLAMELAKRL 74


>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 463

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 371 DNSKVIIVEGPVAAGKTAFAASLADDL 451
           +  KVI++ GP  AGK+  A  LA  L
Sbjct: 48  EKEKVIVISGPTGAGKSRLAMELAKRL 74


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 362 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 466
           R     K+I + GP   GKT+   S+A  L  K F
Sbjct: 444 RGTSQGKIICLSGPTGVGKTSIGRSIARALDRKFF 478


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 362 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 466
           R     K+I + GP   GKT+   S+A  L  K F
Sbjct: 452 RGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFF 486


>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 609

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 341 LIDRTTHRFDDNS-KVIIVEGPVAAGKTAFAASLADDLGM 457
           ++  T  +F+ N  + ++ EGP   GKT+ A  +A+  G+
Sbjct: 348 IVRGTRSKFESNRPRAVLFEGPPGTGKTSCARVIANQAGI 387


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 365 FDDNSKVIIVEGPVAAGKTAFAASLADDLGMK 460
           F+D    ++V  P A GKT     L  D  +K
Sbjct: 184 FEDGVVTVVVSAPYALGKTTLVTKLCHDADVK 215


>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase III [Precursor]
           (SP:P37891) [Oryza sativa]
          Length = 190

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 481 GFALYSSERLDLRSFDDQVPXDTRTFXHVNFNQNPN 588
           GF+ Y+++  DLR  +D V  D   F    F ++PN
Sbjct: 100 GFS-YANDSTDLRHDEDSVSNDLYDFLQAFFKEHPN 134


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 362 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 466
           R     K+I + GP   GKT+   S+A  L  K F
Sbjct: 435 RGTSQGKIICLSGPPGVGKTSIGRSIARALDRKFF 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,689
Number of Sequences: 28952
Number of extensions: 264203
Number of successful extensions: 602
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)