Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060134.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 79 4e-15
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 79 4e-15
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 78 5e-15
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 78 5e-15
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 77 8e-15
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 77 1e-14
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 60 1e-09
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 33 0.18
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 31 0.71
At5g23700.1 68418.m02778 hypothetical protein 30 1.2
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 29 2.2
At3g15550.1 68416.m01971 expressed protein ; expression supporte... 28 5.0
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot... 28 6.6
At5g15360.1 68418.m01798 hypothetical protein 27 8.8
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 78.6 bits (185), Expect = 4e-15
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 242 QSECVHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSY 421
++ + ++ PV I SF +++ +N+++ V N N A F+F+++ + +SY
Sbjct: 36 RTHIMQTKELGNCPVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSY 95
Query: 422 FG-KISEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQVXLPRXDKPQ 592
FG E+ NNFVLIYELLDEI+DFGYP+ L + Q+G V P KP+
Sbjct: 96 FGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG--VRSPFSSKPK 151
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 141 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
P ++ N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 78.6 bits (185), Expect = 4e-15
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +2
Query: 242 QSECVHARQQXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSY 421
++ + ++ PV I SF +++ +N+++ V N N A F+F+++ + +SY
Sbjct: 36 RTHIMQTKELGNCPVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSY 95
Query: 422 FG-KISEEXXXNNFVLIYELLDEILDFGYPRILILGAXRHSSLQQGHQVXLPRXDKPQ 592
FG E+ NNFVLIYELLDEI+DFGYP+ L + Q+G V P KP+
Sbjct: 96 FGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG--VRSPFSSKPK 151
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 141 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNV 254
P ++ N +G+VLI+R YRDD+G N VDAFR ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHI 39
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 78.2 bits (184), Expect = 5e-15
Identities = 31/75 (41%), Positives = 51/75 (68%)
Frame = +2
Query: 281 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNF 460
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E+ NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 461 VLIYELLDEILDFGY 505
VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 78.2 bits (184), Expect = 5e-15
Identities = 31/75 (41%), Positives = 51/75 (68%)
Frame = +2
Query: 281 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNF 460
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E+ NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 461 VLIYELLDEILDFGY 505
VL+YELLDE++DFGY
Sbjct: 110 VLVYELLDEVIDFGY 124
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 77.4 bits (182), Expect = 8e-15
Identities = 33/81 (40%), Positives = 53/81 (65%)
Frame = +2
Query: 269 QXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXX 448
Q PV ++ ++ +NI+L ++QN NAA + FL ++ DV + YF ++ EE
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 449 XNNFVLIYELLDEILDFGYPR 511
+NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = +2
Query: 269 QXRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXX 448
Q PV ++ ++ +N++L ++QN NAA + FL ++ DV + YF ++ EE
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 449 XNNFVLIYELLDEILDFGYPR 511
+NFV++YELLDE++DFGYP+
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQ 127
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/66 (37%), Positives = 41/66 (62%)
Frame = +2
Query: 311 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEI 490
F I R I A ++ + M EFL ++ DV+ Y G ++E+ +NF+++YELLDE+
Sbjct: 58 FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117
Query: 491 LDFGYP 508
+D G+P
Sbjct: 118 IDNGFP 123
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 326 ANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFG 502
A+++ Q N V E + +++ YFG + E NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 326 ANIWLAAVTKQNVNAAMVFEFLLKIXDVMQSYFGKISEEXXXNNFVLIYELLDEILDFG 502
A+++ + N V E + +++ YFG + E NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 247 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 119
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 299 VRCW*QVIAP--AGEHGHIHSECVHSITTNIISVDSRDQHLAFMVINEQ 159
VRC + AP + E H+H+ C H + T ++ + + HL M E+
Sbjct: 64 VRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At3g15550.1 68416.m01971 expressed protein ; expression supported
by MPSS
Length = 188
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 171 NHKGEVLIS-RVYRDDIGRNAVDAFRVNVSMLASRXDHLLPTSHAHLSSISSVQIFGWQR 347
NH G V R D N V + S LA DH P S L+ S+++I WQ
Sbjct: 89 NHLGNAGFDPAVIRIDPYGNVVYFHADSASPLAWSFDHWFPCSRGGLTVPSNLRIVQWQA 148
Query: 348 SQSK 359
++K
Sbjct: 149 RKNK 152
>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 580
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 230 CGRIQSE-CVHARQQXRSPVTNIARTSFFHIKRAN 331
C ++ +E C HA Q R P+ + + FF RAN
Sbjct: 433 CRKLSAEACAHAVQNERLPMRVVVQVLFFEQVRAN 467
>At5g15360.1 68418.m01798 hypothetical protein
Length = 253
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 262 SPA-GAITCYQHRTHIFLPYQACKYLAGSGHKAKCERGYGV*VPVE 396
SPA GA C + R H+FL A L G C G+ +P++
Sbjct: 23 SPATGAPRCGRERAHVFLRSPASTCLGPIGEDGDCHLPGGLALPLD 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,941,609
Number of Sequences: 28952
Number of extensions: 267651
Number of successful extensions: 550
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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