Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060128.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   2.2  
At3g29180.1 68416.m03657 expressed protein                             28   5.0  
At5g39430.1 68418.m04776 hypothetical protein                          28   6.6  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   8.8  
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    27   8.8  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 550 TVTLFPHNTRQSRSFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETN*IKSLGNI 371
           T  LFP  ++   + +L+  N ++   +    + H N  E +Q    ++E +  K L N+
Sbjct: 232 TGNLFPTRSKYDEAMMLERRNMLLKMLKFGGNWKHINLEEDEQLCYNHIEIDIKKLLENL 291

Query: 370 G 368
           G
Sbjct: 292 G 292


>At3g29180.1 68416.m03657 expressed protein
          Length = 513

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 191 FREGESRRAPSAGPMLPVAA-VIDAPRALFHIPTHHQLP*IRSPA 322
           F++ +   AP+  P  P+   +   PR + HI  H +LP I++ A
Sbjct: 268 FKDKKKSPAPNQCPYTPIGVDLFVCPRKIDHIAQHIELPNIKAEA 312


>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 191 FREGESRRAPSAGPMLPVAA-VIDAPRALFHIPTHHQLP*IRSPA 322
           F++     AP+  P  P+   +   PR + HI  H +LP I++ A
Sbjct: 265 FKDKRKHPAPNQCPYTPIGVDLFVCPRKIDHIAQHIELPNIKAVA 309


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 680  LHGHRCFSSAGPRSKPARAVTSALGWCNFTSQPPNGPVTIEQ 555
            L  H+ FS   PR    R  TSAL   +F+ Q  +G + ++Q
Sbjct: 1899 LINHQRFSFQNPRCTDPRVKTSALLQAHFSRQKISGNLVMDQ 1940


>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 344 IVGCAQQQRGSEFKVTDDG*VCGTVREVRLSPPLPAAWVQRMALSCSRLHGNTSCLFVLS 165
           +V C+    GSE  V+DD  V G+ +  + S  LP+ +V  +    S   G T   F LS
Sbjct: 80  LVECSGSDFGSEETVSDDASVVGSSQTEQSSDVLPSRFVLEIPKHLSST-GITKITFKLS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,605
Number of Sequences: 28952
Number of extensions: 336486
Number of successful extensions: 947
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)