Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060126.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47600.1 68416.m05182 myb family transcription factor (MYB94)...    29   2.9  
At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide sy...    29   2.9  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    28   6.7  
At1g29080.1 68414.m03560 peptidase C1A papain family protein con...    28   6.7  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   8.8  

>At3g47600.1 68416.m05182 myb family transcription factor (MYB94)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB94) GI:3941527
          Length = 333

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 513 SDAYASTTLISAVVRNTTTFQIEYYXNVAEKCLTALKSEMSDFPRSHAGL 662
           S + +STT  +   RNT  +    Y + AE     L++ M D P++   L
Sbjct: 196 SSSSSSTTTTTTTTRNTNPYPSGVYASSAENIARLLQNFMKDTPKTSVPL 245


>At1g08130.1 68414.m00892 DNA ligase / polydeoxyribonucleotide
           synthase [ATP] identical to SP|Q42572 DNA ligase (EC
           6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])
           {Arabidopsis thaliana}; contains Pfam profiles: PF01068
           ATP dependent DNA ligase domain, PF04679 ATP dependent
           DNA ligase C terminal region, PF04675 DNA ligase N
           terminus
          Length = 790

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 323 FILFIRDLVEKVVNSGYFCLMVSFSSKLSDIPCSMCSASEMSPRPSCSD 177
           ++  I  L  K   S +  +++SFS ++S +  S C  +  S RPS  D
Sbjct: 9   YLRCIPSLCTKTQISQFSSVLISFSRQISHLRLSSCHRAMSSSRPSAFD 57


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 556 AIPPRFKSSITGTW 597
           A+P RFK SI GTW
Sbjct: 85  AVPSRFKDSIVGTW 98


>At1g29080.1 68414.m03560 peptidase C1A papain family protein
           contains similarity to cysteine protease SPCP1
           GI:13491750 from [Ipomoea batatas]; contains Pfam
           profile PF00112: Papain family cysteine protease
          Length = 346

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 475 KFVHTMRLEVCLVGTVLDAVHMASPCSLISQTRPALQWT 359
           +F    + E     T L  V++ SP  ++++T+PA  WT
Sbjct: 87  EFTDWTKEEFLATYTGLRGVNVTSPFEVVNETKPAWNWT 125


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 105 MTAITRANARRPFILPFDDAFLCEAGGSR 19
           MT +   + R PF++PFD   L E   S+
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,582
Number of Sequences: 28952
Number of extensions: 268511
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)