Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060122.seq
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 134 6e-32
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 123 1e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 123 1e-28
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 99 1e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 91 8e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 90 1e-18
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 87 7e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 87 7e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 87 7e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 81 5e-16
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 5e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 68 5e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 67 1e-11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 62 3e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 6e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 53 1e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 52 3e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 3e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 51 8e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 50 1e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 48 4e-06
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 48 7e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 2e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 46 2e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 3e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 45 4e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 45 5e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 44 1e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 44 1e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 42 3e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 42 5e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 40 0.001
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 40 0.002
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 39 0.003
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 39 0.003
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 38 0.004
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 38 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.006
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 37 0.010
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 37 0.010
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 37 0.010
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 36 0.031
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 36 0.031
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.031
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 35 0.055
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.29
At5g43990.2 68418.m05382 SET domain-containing protein identical... 31 0.51
At5g43990.1 68418.m05383 SET domain-containing protein identical... 31 0.51
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 31 0.67
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 30 1.2
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 30 1.2
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 2.1
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 2.1
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.1
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 2.7
At2g33420.1 68415.m04096 expressed protein 28 4.8
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 28 4.8
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 28 6.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.3
At2g25460.1 68415.m03049 expressed protein 27 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 134 bits (323), Expect = 6e-32
Identities = 62/119 (52%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Frame = +3
Query: 240 SPR-LGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 416
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
PDYV + VK G+ EPTPIQ+QGWP + ++L+G+A T SGKTL+Y+LPAIVH+N QP
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQP 165
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 123 bits (296), Expect = 1e-28
Identities = 53/117 (45%), Positives = 79/117 (67%)
Frame = +3
Query: 243 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 422
P+ +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 423 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
+ + + +G+ EPTPIQAQGWP + ++L+G+A T SGKTLAY+LPA+VH++ QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 123 bits (296), Expect = 1e-28
Identities = 53/117 (45%), Positives = 79/117 (67%)
Frame = +3
Query: 243 PRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 422
P+ +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 423 YVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
+ + + +G+ EPTPIQAQGWP + ++L+G+A T SGKTLAY+LPA+VH++ QP
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 99 bits (238), Expect = 1e-21
Identities = 42/116 (36%), Positives = 69/116 (59%)
Frame = +3
Query: 255 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 434
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 435 GVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPIR 602
+K Y++PT IQ Q P ++++G+A T SGKT A++LP IVHI +QP ++
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 297
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/114 (35%), Positives = 64/114 (56%)
Frame = +3
Query: 258 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 437
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 438 VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPI 599
+K + Y++P PIQAQ P ++ +GVA T SGKTL ++LP + HI +QPP+
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 464
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 90.2 bits (214), Expect = 1e-18
Identities = 40/114 (35%), Positives = 64/114 (56%)
Frame = +3
Query: 258 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 437
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 438 VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPPI 599
+K + Y++P PIQ Q P ++ +GVA T SGKTL ++LP + HI +QPP+
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 597
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 473
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 474 QAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
QAQ WP + +++V +A T SGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 473
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 474 QAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
QAQ WP + +++V +A T SGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/96 (40%), Positives = 56/96 (58%)
Frame = +3
Query: 294 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 473
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 474 QAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
QAQ WP + +++V +A T SGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 81.4 bits (192), Expect = 5e-16
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Frame = +3
Query: 276 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 443
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 444 TMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIV 575
+ G+ PTPIQAQ WP + +++V +A T SGKTL Y++PA +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/97 (35%), Positives = 56/97 (57%)
Frame = +3
Query: 285 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 464
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 465 TPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIV 575
TPIQ QG P ++++G+A T SGKTL ++LP I+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = +3
Query: 288 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 467
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 468 PIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIV 575
PIQ QG P ++++G+A T SGKTL ++LP I+
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/87 (31%), Positives = 52/87 (59%)
Frame = +3
Query: 339 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLV 518
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 519 GVAXTASGKTLAYILPAIVHINNQPPI 599
G+A T SGKT A++LP + +I+ PP+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPM 381
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +3
Query: 327 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSY 500
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 501 VWKNLVGVAXTASGKTLAYILPAIVHI 581
++L+G+A T SGKTLA+ +PAI+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 54.4 bits (125), Expect = 6e-08
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 438 VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI 581
V + G+ P+PIQAQ WP + +++V +A T SGKTL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 333 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 422
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +3
Query: 360 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTAS 539
TV GV H F E N + + +T+GYK+PTPIQA P + ++L A T S
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 540 GKTLAYILPAIVHINNQP 593
GKT A+ LP + + +P
Sbjct: 216 GKTAAFALPTLERLLFRP 233
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/102 (28%), Positives = 50/102 (49%)
Frame = +3
Query: 267 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 446
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 447 MGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
MG+ T IQA+ P + ++++G A T SGKTLA+++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 342 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK 509
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q P +
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 510 NLVGVAXTASGKTLAYILPAIVHI 581
A T SGKT A+I P ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 318 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 491
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 492 DSYVWKNLVGVAXTASGKTLAYILPAI 572
+ K+L+ A T SGKT ++++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/82 (37%), Positives = 42/82 (51%)
Frame = +3
Query: 327 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVW 506
EVEE RN+ E E P + FEE + + + G ++PT IQ P
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 507 KNLVGVAXTASGKTLAYILPAI 572
K++V A T SGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE N V +K GYK PTPIQ + P ++V +A T SGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 579 INNQPP 596
+ P
Sbjct: 90 LKQHVP 95
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Frame = +3
Query: 264 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 440
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 441 KTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
+ Y +PTP+Q P ++L+ A T SGKT A+ P I
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 357 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTA 536
V SG +V P+ F + + D + ++ Y PTP+Q P ++L+ A T
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 537 SGKTLAYILPAI 572
SGKT A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +3
Query: 357 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTA 536
V SG +V P+ F + + D + ++ Y PTP+Q P ++L+ A T
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 537 SGKTLAYILPAI 572
SGKT A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE ++ + K +G ++PTP+Q P ++++G+A T SGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 579 INNQP 593
+ P
Sbjct: 120 LAEDP 124
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Frame = +3
Query: 270 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 446
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 447 MGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
Y +PTP+Q P ++L+ A T SGKT A+ P I
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/67 (26%), Positives = 39/67 (58%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPA 569
++ F + D ++G+K Y + T +Q+ P + ++++G A T SGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 570 IVHINNQ 590
+ ++ +
Sbjct: 130 LEKLHRE 136
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/66 (30%), Positives = 39/66 (59%)
Frame = +3
Query: 375 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLA 554
E + ++ F E + + + + +G+K P+ IQA+ P + K+++G+A T SGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 555 YILPAI 572
+ +P +
Sbjct: 63 FAIPIL 68
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +3
Query: 330 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWK 509
+E+ + + + G + + F+ + + +K MG++ T IQA K
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 510 NLVGVAXTASGKTLAYILPAI 572
+++G A T SGKTLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FEE PD + ++ G+ PT +Q+ P + V + T SGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 579 I 581
I
Sbjct: 172 I 172
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 447 MGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPP 596
MG++ PT +QAQ P ++++ A T +GKT+AY+ P I H+ P
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSP 97
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +3
Query: 390 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPA 569
++ F+E + V ++ + + PT IQ G P K++V + T SGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 570 I 572
+
Sbjct: 171 V 171
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F++ +G++ G+K T +Q P K+++ A T +GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 579 INNQPP 596
+ PP
Sbjct: 142 VIKAPP 147
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +3
Query: 363 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASG 542
V VEV NP + +++ +K G + PIQA + +LVG A T G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 543 KTLAYILPAIVHINNQP 593
KTLA++LP + + N P
Sbjct: 146 KTLAFVLPILESLVNGP 162
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +3
Query: 417 PDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQ 590
P+++ ++ +G+ PT IQ + P + ++ + A T SGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPP 596
+ +K GY+ T +Q P K+++ A T +GKT+A++LP+I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +3
Query: 432 QGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQPP 596
+ +K G++ T +Q P K+++ A T +GKT+A++LPAI + PP
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPP 449
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +3
Query: 450 GYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI---NNQPP 596
G++ TP+QA+ P K++V A T SGKTLA++LP I I N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +3
Query: 450 GYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHI---NNQPP 596
G++ TP+QA+ P K++V A T SGKTLA++LP I I N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 426 VQQGVKTMGYKEPTPIQAQGWP-DSYVWKNLVGVAXTASGKTLAYILPAI 572
+ + + + +KEPT IQ + +Y K+++G A T SGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + G+ G++ P+PIQ + P + ++++ A +GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 579 IN 584
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + G+ G++ P+PIQ + P + ++++ A +GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 579 IN 584
I+
Sbjct: 193 ID 194
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 387 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKT--LAYI 560
PI+ F++ D V +GV GYK+P+ IQ + ++++ A + +GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 561 LPAIVHINNQ 590
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + +G+ G+++P+PIQ + P + +++ A +GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 579 IN 584
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + +G+ G+++P+PIQ + P + +++ A +GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 579 IN 584
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
FE+ + +G+ G+++P+PIQ + P + +++ A +GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 579 IN 584
I+
Sbjct: 216 ID 217
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 34.7 bits (76), Expect = 0.055
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVH 578
F E + + + +K + P IQA + K+ + + SGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 579 INNQ 590
+ +
Sbjct: 436 LREE 439
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 465 TPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
TP+QA P +K++ A T SGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 31.5 bits (68), Expect = 0.51
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 237 ASPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 416
ASP LGS +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 417 PDYVQQGVKTM 449
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 31.5 bits (68), Expect = 0.51
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 237 ASPRLGSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 416
ASP LGS +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 417 PDYVQQGVKTM 449
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 300 PTVLKRSPYEVEEYRNNHEVTVS-GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 476
P ++ P+ +EE RN + + + +E Q +E N D ++ + T+ KE +
Sbjct: 170 PGLIPEKPFIMEEIRNENGLQLDINLERELMKQRLKELNEQDCSEEDI-TLSMKELGMER 228
Query: 477 AQ--GWPDSYVWKNLVG 521
A+ GWP++YV+ +G
Sbjct: 229 AKLHGWPNTYVFTKSMG 245
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 494 IGPALSLNRRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVIISVLFDFIW*S 315
+GP +L + F++ CL + L + C + + + + A ++ + L W S
Sbjct: 10 VGPVFTLRPSKGFLSTCLVSFLFVTTTFCSYAIADLNSDRQALLAFAASVPHLRRLNWNS 69
Query: 314 FEN-CRMWI 291
+ C+ W+
Sbjct: 70 TNHICKSWV 78
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 426 VQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
+ + +K G ++ PIQ + ++++G A T +GKTLA+ +P I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +3
Query: 411 NFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAIVHINNQ 590
+ P +++ ++ G PIQ + ++++ A T +GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +3
Query: 426 VQQGVKTMGYKEPTPIQAQGWPDSY----VWKNLVGVAXTASGKTLAYILPAIVHINNQP 593
+++ ++ MG P+Q W ++ +++ + T SGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 594 PIR 602
P+R
Sbjct: 91 PVR 93
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +3
Query: 426 VQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
+ + + + G ++ PIQ + ++++G A T +GKTLA+ +P I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 182 LEDLEDLVGKKNSLEVRTCVAQIGICFTPTF 274
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 21 SKRIHSLNKHLQLNPKI 71
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +3
Query: 276 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 437
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 438 VKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
+ G + T +Q + K+ + A T +GK++A++LPAI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 399 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPDSYVWKNLVGVAXTASGKTLAYILPAI 572
F+E+ + + G + T +Q + K+ + A T +GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 21 SKRIHSLNKHLQLNPKI 71
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 157 ETNYRRICCLLQIWNHRFHGYY 92
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,002
Number of Sequences: 28952
Number of extensions: 250603
Number of successful extensions: 753
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -