Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060114.seq
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67035.1 68414.m07623 expressed protein ; expression supporte...    29   2.6  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    29   3.5  
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)...    29   3.5  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    29   3.5  

>At1g67035.1 68414.m07623 expressed protein ; expression supported
          by MPSS
          Length = 229

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 75 KLKLVTEIADGGFH*GSRYGVSAR 4
          KLKL+ +  D GF  GSRYG  AR
Sbjct: 26 KLKLLVDNGDYGFERGSRYGEYAR 49


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 177 WMVLARVLTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFH*GSRYGVSAR 4
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H  +R+   +R
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRHAEISR 320


>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
           identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
           4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
           thaliana}
          Length = 702

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 633 PDMGKVEACDGNC*WRFSLGEPLWRLGGW 547
           P        DG+C W  SL   L+R+ GW
Sbjct: 20  PSSVSTAVVDGSCHWSPSLSSSLYRIDGW 48


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
           SP|Q61493 DNA polymerase zeta catalytic subunit (EC
           2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
           DNA polymerase family B
          Length = 1890

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 384 SPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCAYMAFTNLVDTL 539
           S S +RHQ    + S   + G   + DI NQQ ++        + TN+V +L
Sbjct: 261 SQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMYNSLSQAQSDTNMVQSL 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,709,074
Number of Sequences: 28952
Number of extensions: 239888
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)