Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060108.seq
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    46   2e-05
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    46   2e-05
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c...    33   0.23 
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s...    31   0.70 
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    29   3.7  
At1g51990.2 68414.m05865 O-methyltransferase family 2 protein si...    27   8.6  
At1g51990.1 68414.m05864 O-methyltransferase family 2 protein si...    27   8.6  

>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 473 VSVPARQLPAP--ACFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEV 628
           + V  R LP     CFD  +F+++N+R   W CP+C +    + ++VD YF  +
Sbjct: 370 IKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRI 423


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 473 VSVPARQLPAP--ACFDASLFLQMNERKPTWLCPVCDRAAPYDSLVVDGYFQEV 628
           + V  R LP     CFD  +F+++N+R   W CP+C +    + ++VD YF  +
Sbjct: 370 IKVAGRFLPCVHMGCFDLDVFVELNQRSRKWQCPICLKNYSVEHVIVDPYFNRI 423


>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
           contains Pfam domain PF02891: MIZ zinc finger
          Length = 703

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 405 DSEIATTSLRVSLMCPLGKMRMSCPCRPANCPHL 506
           DS+I     RVSL CP+ + R+  P +   C HL
Sbjct: 281 DSDIIEGPSRVSLSCPISRKRIKLPVKGQLCKHL 314


>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
           similar to putative variable cytadhesin protein
           (GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
           PF02891: MIZ zinc finger domain
          Length = 842

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 384 EKLSEDYDSEIATTSLRVSLMCPLGKMRMSCPCRPANCPHL 506
           E +  + D +I     R+SL CP+ + R+  P +   C HL
Sbjct: 275 EVVGSNSDCDIIEGPSRISLSCPISRTRIKLPVKGHVCKHL 315


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 315 AELLQRLKNKGTKNPDYTRSLIKEKLSEDYDSEIATTSLRVSLMCPLGKM 464
           A LLQRL+ +    PDY    + E + E+   E   ++      CPLG++
Sbjct: 2   ANLLQRLRRRTGPKPDYIEDKLDEYIREEQVEETGGSNQD----CPLGEI 47


>At1g51990.2 68414.m05865 O-methyltransferase family 2 protein
           similar to caffeic acid O-methyltransferase GI:5031492
           from [Ocimum basilicum], [SP|Q00763] [Populus
           tremuloides]
          Length = 363

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 198 HIVAREAVAHGLQHDPGDVAADFTRA-YVLSVFMVKKLTSAELLQRLKNKGTKNPDYTRS 374
           HIV      HG++H  GD+  +  R   +L  +++      + ++ LKN     P+  R 
Sbjct: 232 HIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRI 291

Query: 375 LIKEKL--SEDYDSEIAT 422
           ++ E +   E  ++++AT
Sbjct: 292 IVIEMIVPREVSETDLAT 309


>At1g51990.1 68414.m05864 O-methyltransferase family 2 protein
           similar to caffeic acid O-methyltransferase GI:5031492
           from [Ocimum basilicum], [SP|Q00763] [Populus
           tremuloides]
          Length = 363

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 198 HIVAREAVAHGLQHDPGDVAADFTRA-YVLSVFMVKKLTSAELLQRLKNKGTKNPDYTRS 374
           HIV      HG++H  GD+  +  R   +L  +++      + ++ LKN     P+  R 
Sbjct: 232 HIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRI 291

Query: 375 LIKEKL--SEDYDSEIAT 422
           ++ E +   E  ++++AT
Sbjct: 292 IVIEMIVPREVSETDLAT 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,561
Number of Sequences: 28952
Number of extensions: 221457
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)