Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060102.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45540.1 68418.m05593 expressed protein contains Pfam domain,...    33   0.23 
At1g08780.1 68414.m00977 prefoldin, putative similar to Swiss-Pr...    29   2.8  
At4g31570.1 68417.m04483 expressed protein                             29   3.7  
At2g45510.1 68415.m05660 cytochrome P450, putative                     29   3.7  
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR...    28   4.9  
At2g40820.1 68415.m05038 proline-rich family protein contains pr...    28   4.9  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    28   6.5  
At5g14460.1 68418.m01692 pseudouridylate synthase TruB family pr...    27   8.6  

>At5g45540.1 68418.m05593 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594; expression
           supported by MPSS
          Length = 803

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +1

Query: 265 KGKKIPVSLRPDVWLLCLNC-QDAGNQLLLFDE-IFDLPNQNELRDDVKKFVEKLGNEED 438
           KG++    +RPD  L  L   Q A     +F   I DL   N+ RD+ +KF +KL  EE 
Sbjct: 214 KGREGNTPVRPDNELTALQVIQYAYKYFNIFKGLIVDLIFTNQERDESRKFFDKLTAEE- 272

Query: 439 DKLAVISDVESIITFYCKSKNTTSLQTMVGLIFYYL 546
             L +I +VE  + + C       L    G +F ++
Sbjct: 273 -ALRII-EVELGLIYDCLFTKAEILHNWTGAVFRFI 306


>At1g08780.1 68414.m00977 prefoldin, putative similar to
           Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1)
           [Homo sapiens]
          Length = 129

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +1

Query: 313 CLNCQDAGNQLLLFDEIFDLPNQNEL-----RDDVKKFVEKLGNEEDDKLAVI-SDVESI 474
           C N +DAGN+L+L DE        E+     RDDV+  +E++       L  +  + ESI
Sbjct: 46  CENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESI 105

Query: 475 IT 480
           +T
Sbjct: 106 VT 107


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 379  QNELRDDVKKFVEKLGNEE 435
            QN+++D  +K VEKLGNEE
Sbjct: 1669 QNQVKDLHEKLVEKLGNEE 1687


>At2g45510.1 68415.m05660 cytochrome P450, putative 
          Length = 511

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 304 WLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGNEEDDKL 447
           W L + C++   Q  +  EI D+   +E   DV  FVE +  E  D++
Sbjct: 316 WFLYMLCKNPLVQEKIVQEIRDVTFSHEKTTDVNGFVESINEEALDEM 363


>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1197

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +2

Query: 146 NLNLSCQTKQMAGDDDDTWLIELESALLDGCTAQEIMH*RKEKKYLLAYVLMCGC 310
           NLN S +   +AG      L EL    L+GCTA + MH   E    L ++ + GC
Sbjct: 666 NLNHSKKLNTLAGLGKAQNLQELN---LEGCTALKEMHVDMENMKFLVFLNLRGC 717


>At2g40820.1 68415.m05038 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 903

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 125 WSSKSCEKYIKTIS*ILKFSFANFSNFKLAYQIC 24
           W +K+ E Y  ++   LKFSF++  N  + +Q+C
Sbjct: 435 WITKAREIYSTSMQLYLKFSFSSSLNGLVTFQLC 468


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 304 WLLCLNCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEKLGN-EEDDKLAVISDV 465
           W+L       GN+L L ++   L ++N    + ++FV +L N  E D+L    D+
Sbjct: 113 WVLSKGHSSVGNELRLLEKFQKLDSRNFHAWNYRRFVVELTNRSEQDELQYTDDM 167


>At5g14460.1 68418.m01692 pseudouridylate synthase TruB family
           protein similar to SP|P09171 tRNA pseudouridine synthase
           B (EC 4.2.1.70) (tRNA pseudouridine 55 synthase)
           (Pseudouridylate synthase) (Uracil hydrolyase)
           {Escherichia coli O157:H7}; contains Pfam profile
           PF01509: TruB family pseudouridylate synthase (N
           terminal domain)
          Length = 540

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 319 NCQDAGNQLLLFDEIFDLPNQNELRDDVKKFVEK 420
           NC +  ++L+ FDE+ +   + +  DDV    EK
Sbjct: 243 NCDEDDDKLVFFDEVKEKEEKKKSEDDVVVVTEK 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,321
Number of Sequences: 28952
Number of extensions: 250162
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)