Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060098.seq
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09630.1 68417.m01583 expressed protein contains Pfam profile...    31   0.93 
At1g59930.1 68414.m06751 hypothetical protein                          29   2.1  
At1g67000.1 68414.m07618 protein kinase family protein contains ...    29   3.8  
At1g59920.1 68414.m06750 hypothetical protein                          28   5.0  
At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At3g45020.1 68416.m04850 50S ribosomal protein-related contains ...    27   8.7  
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 711

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 210 DGLRVPLLPDTEKLHREESVFSHDHEVDEEASRGLDHSDLSVSHRDQPLVNE 55
           DG   P   DTE  + ++S+ SHD + DE    G D  +   SH+D    NE
Sbjct: 221 DGHHQPF--DTES-NEDDSIDSHDTQGDEYVDMGHDGDENEESHKDNHKHNE 269


>At1g59930.1 68414.m06751 hypothetical protein
          Length = 132

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 574 EPAAGVAAQVEAPDLVVDEDGQMNGMAGSHH 482
           EP++ +  +V   DL V+EDG +  M GSHH
Sbjct: 78  EPSSSLPPRV-LQDLNVEEDGDIPSMDGSHH 107


>At1g67000.1 68414.m07618 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 717

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 154 GFLPMKLFGIRKQ--WDSKAINDLTDSYGQEWTYRDARRSSL 273
           G L +++ G RK+  +D  + +D +  Y  EW Y+D  ++++
Sbjct: 571 GMLVLEMIGARKKERFDQNSRSDGSSIYFPEWIYKDLEKANI 612


>At1g59920.1 68414.m06750 hypothetical protein
          Length = 132

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 574 EPAAGVAAQVEAPDLVVDEDGQMNGMAGSHH 482
           EP++ +  +V   DL V EDG +  M GSHH
Sbjct: 78  EPSSSLPPRV-LQDLNVKEDGDIPSMDGSHH 107


>At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 794

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 82  AYGQIGMIQAAAGFFVYFVIMAENGFLP 165
           AY Q GM++ A  FF   +   ENGF+P
Sbjct: 578 AYSQHGMVEKALSFFEQIL---ENGFMP 602


>At3g45020.1 68416.m04850 50S ribosomal protein-related contains
           weak similarity to Swiss-Prot:P23407 cyanelle 50S
           ribosomal protein L18 [Cyanophora paradoxa]
          Length = 133

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 434 VREERRQRGFKYETKVEGPVAHALVNDRVTAGLADNQVGPLHNDNRYE 291
           V++E  ++GFK  TKV   V ++L N+ VT  L D+     + D  +E
Sbjct: 84  VKKEIEKKGFKSRTKV-WAVINSLRNNGVTLILDDDDDDDEYRDRSFE 130


>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 633

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 166 MKLFGIRKQWDSKAINDLTDSYGQEWTYRDARRSSLLATPHS 291
           +KLF   ++WDS   N +  SY       DA R  +LA   S
Sbjct: 290 VKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLFILAMTQS 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,402
Number of Sequences: 28952
Number of extensions: 330913
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)