Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060095.seq
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59910.1 68416.m06686 expressed protein                             28   4.5  
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv...    28   4.5  
At4g11960.1 68417.m01904 expressed protein hypothetical protein ...    28   6.0  
At5g56050.1 68418.m06993 hypothetical protein                          27   7.9  
At2g28660.1 68415.m03484 copper-binding family protein similar t...    27   7.9  
At1g78760.1 68414.m09179 F-box family protein contains F-box dom...    27   7.9  

>At3g59910.1 68416.m06686 expressed protein
          Length = 611

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 278 HSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQK 391
           +S  C CGC  K L+ KG+ +LVE   E I  ++K  +
Sbjct: 62  NSGEC-CGCSAKKLNFKGDDDLVE--KENIEQQKKLNR 96


>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
           invertase, putative / saccharase, putative /
           beta-fructosidase, putative similar to neutral invertase
           [Daucus carota] GI:4200165; contains Pfam profile
           PF04853: Plant neutral invertase
          Length = 633

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/86 (25%), Positives = 40/86 (46%)
 Frame = +2

Query: 233 SKVRWDPASTSLLHNHSNTCSCGCGLKALHTKGERELVEFLTEEIVAERKAQKVKSLPAE 412
           S V     S +  H+ S TC+    L  ++TK    +   + E +  + K +  +++  +
Sbjct: 73  SSVTAQVVSEARSHSASTTCANDTTLDQIYTKNGLNVKPLVVERLKRDEKDE--EAVNED 130

Query: 413 VEGFTVKGDGAEVVLTKQLKDETIRV 490
            EG  VK DG E V    +++E  R+
Sbjct: 131 EEG--VKRDGFEGVKCNDVEEEAWRL 154


>At4g11960.1 68417.m01904 expressed protein hypothetical protein
           F7H19.70 - Arabidopsis thaliana, PID:e1310057
          Length = 313

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 471 LSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISS 358
           ++C    T  P+PFT   S S  R LT   L+++T  S
Sbjct: 18  ITCSSSRTQCPAPFTHGRSISLRRRLTLLPLKASTDQS 55


>At5g56050.1 68418.m06993 hypothetical protein 
          Length = 283

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -1

Query: 481 CFIFK-LLC*NNFSTVSLY------SKAFDFSRERLDLLCFAFSNYFFCQELYQFSFTFR 323
           CFIF  LL     +T+ LY      +  FD S  +L+ + F    YF    L Q +FT  
Sbjct: 107 CFIFSILLIVFGIATLILYLAVKPRTPVFDISNAKLNTILFESPVYFNGDMLLQLNFTNP 166

Query: 322 VKRL 311
            K+L
Sbjct: 167 NKKL 170


>At2g28660.1 68415.m03484 copper-binding family protein similar to
           copper homeostasis factor gi:3168840 from Arabidopsis
           thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 265

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 471 LSCFVKTTSAPSPFTVKPSTSAGRDLTFCALRSATISSVRNSTSSL 334
           LSC   +  +PS F  K +++ G D+      SA +S +R S SSL
Sbjct: 67  LSCR-NSFESPSGFRPKIASARGSDVQIRRKSSADVSDLRRSRSSL 111


>At1g78760.1 68414.m09179 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 452

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 377 VQQLFLLSGTLPVLFHLSCEAPSTRSRS 294
           V++LF+ S TL V+  L CE P  R+ S
Sbjct: 297 VKKLFISSHTLEVIHDLGCELPLFRNLS 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,500,433
Number of Sequences: 28952
Number of extensions: 246408
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)