Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme...    28   5.5  
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    28   5.5  
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00...    28   7.3  
At1g61430.1 68414.m06922 S-locus protein kinase, putative simila...    28   7.3  
At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protei...    27   9.6  
At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /...    27   9.6  
At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /...    27   9.6  

>At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 348

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 65  CSLFSRAEFLQPGGSTSSRAA 3
           C +  + EFL PGGS   R A
Sbjct: 65  CEILGKCEFLNPGGSVKDRVA 85


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 65  CSLFSRAEFLQPGGSTSSRAA 3
           C +  + EFL PGGS   R A
Sbjct: 65  CEILGKCEFLNPGGSVKDRVA 85


>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 778

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -1

Query: 554 WNYNDVEAIYVSYRWI*LMSD-DIWSRTHLYFMM-HAGIKYTLFGF-AVGPSWGSILYIL 384
           WN  D+   Y S RW   M+D  +     L  +M H    + +F F +V  SW S++  L
Sbjct: 449 WNARDLSFTYRSLRWNLTMADWPLLPNDLLELIMGHLETSFEIFLFRSVCSSWRSVVPPL 508

Query: 383 STPCCLSHVTPHI 345
               CL   T  I
Sbjct: 509 DHSRCLGIKTHDI 521


>At1g61430.1 68414.m06922 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 806

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 715 GLIWSTNNCLNKNGTLNSITDHRG-PLIPHASGCNLTTPYKPLLSNIESNEFKTFGII 545
           G++WST +    NG+   +TDH     I   SG  L   ++ L + +       + ++
Sbjct: 105 GVVWSTGDIFASNGSRAELTDHGNLVFIDKVSGRTLWQSFEHLGNTLLPTSIMMYNLV 162


>At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protein,
           putative similar to CND41, chloroplast nucleoid DNA
           binding protein [Nicotiana tabacum] GI:2541876; contains
           Pfam profile PF00026: Eukaryotic aspartyl protease
          Length = 474

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +3

Query: 522 DVNGFHIIIIPKVLNSFD--SILE--SKGLYGVVKLHPLAWGING 644
           D++GF  + IPKV  SF   +++E  SKG++ V K+  +     G
Sbjct: 393 DLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAG 437


>At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 449

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 425 FAVGPSWGSILYILSTPCCLSHVT 354
           F++  S+GS+  ++S PC +SH +
Sbjct: 385 FSIAVSFGSVKSLISMPCFMSHAS 408


>At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 464

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 425 FAVGPSWGSILYILSTPCCLSHVT 354
           F++  S+GS+  ++S PC +SH +
Sbjct: 400 FSIAVSFGSVKSLISMPCFMSHAS 423


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,860
Number of Sequences: 28952
Number of extensions: 337349
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)