Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0017
(418 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 27 3.8
At5g44190.1 68418.m05407 myb family transcription factor (GLK2) ... 27 5.1
At3g59530.2 68416.m06644 strictosidine synthase family protein s... 27 5.1
At3g59530.1 68416.m06643 strictosidine synthase family protein s... 27 5.1
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa... 27 5.1
At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein con... 27 6.7
At1g66880.1 68414.m07601 serine/threonine protein kinase family ... 27 6.7
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 26 8.9
At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /... 26 8.9
At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /... 26 8.9
At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibit... 26 8.9
At1g11810.1 68414.m01357 F-box family protein contains Pfam PF00... 26 8.9
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 157 VRFIRIPASHPIPVYLAIEQHLSIGIIKTGRGLRSLSSVSKKLEIVERF 11
+ F+ IP+ P PV L++ Q ++GI K + LS +S +I RF
Sbjct: 342 MNFVAIPS--PQPVELSLIQ--AVGITKFDSYIEGLSGLSLSFDITRRF 386
>At5g44190.1 68418.m05407 myb family transcription factor (GLK2)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 386
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = -3
Query: 131 PPH--PGLPGHRTTLEYWDHKNWPR 63
PPH P GH L W H WP+
Sbjct: 244 PPHVAPMHHGHFRPLHVWGHPTWPK 268
>At3g59530.2 68416.m06644 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 206 FPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVNYSIY 319
FP++++I++EG W+ +D + L N SIY
Sbjct: 300 FPDNVRINEEGQFWVAIDCCRTPAQEVLTNNPWIRSIY 337
>At3g59530.1 68416.m06643 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 403
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 206 FPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVNYSIY 319
FP++++I++EG W+ +D + L N SIY
Sbjct: 300 FPDNVRINEEGQFWVAIDCCRTPAQEVLTNNPWIRSIY 337
>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 369
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 182 FSDPKLYE--FPNDLKIDDEGLMWILVDKLPRFLYKTL 289
FSD Y+ + D GL L+D LP FLYK +
Sbjct: 98 FSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLYKEI 135
>At5g08500.1 68418.m01007 transmembrane CLPTM1 family protein
contains Pfam profile PF05602: Cleft lip and palate
transmembrane protein 1 (CLPTM1)
Length = 590
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 305 NYSIYSISAKDAIAGTACEYILYTYIL 385
N S+ +SAK + C++I++ Y+L
Sbjct: 357 NKSMEGLSAKSVVLNFICQFIIFLYLL 383
>At1g66880.1 68414.m07601 serine/threonine protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 1296
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -3
Query: 284 SCTGTVGVCRPGSTLSLRHQSLSRLEIRKVWDH*ISVRCSQECK 153
SC V + GSTL++ + S ++K ++ + +Q+C+
Sbjct: 782 SCDRNVSIPASGSTLNILQSTPSNDNLKKALEYGFELELNQDCR 825
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 26.2 bits (55), Expect = 8.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 305 NYSIYSISAKDAIAGTACEYILYTYIL 385
N S+ +SAK + C+++++ Y+L
Sbjct: 359 NKSMEGLSAKSVVLNFICQFVIFLYLL 385
>At3g46450.2 68416.m05036 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh1p (GI:|2739044)
{Glycine max}
Length = 494
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 185 SDPKLYEFPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVN 307
SD + + P+D++I+DE + ++ R LY+ L+ ++
Sbjct: 165 SDSQTLQSPSDIRIEDEAPLPVISQDWLRKLYEELEKQRLS 205
>At3g46450.1 68416.m05035 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; similar to
polyphosphoinositide binding protein Ssh1p (GI:|2739044)
{Glycine max}
Length = 486
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +2
Query: 185 SDPKLYEFPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVN 307
SD + + P+D++I+DE + ++ R LY+ L+ ++
Sbjct: 157 SDSQTLQSPSDIRIEDEAPLPVISQDWLRKLYEELEKQRLS 197
>At1g47960.1 68414.m05342 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 205
Score = 26.2 bits (55), Expect = 8.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +2
Query: 158 TPENNVLIFSDPKLYEFPNDLKIDDEGLMWILVDKLPRFLYKTLDPNEVN 307
TP+ N+ + L P D GL IL+DK+ KTL NE+N
Sbjct: 33 TPDFNLCV---SLLNSDPRGSSADTSGLALILIDKIKGLATKTL--NEIN 77
>At1g11810.1 68414.m01357 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; EST gb|AA605362 comes
from this gene
Length = 377
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 26 FKLLGDRGQGTQASASFYDPNTQVLFYGQVNRDGVGCWNSNK 151
F+ LGD G+G + D + VL+ RD +G W S +
Sbjct: 239 FESLGDEGEGIMVISCVRDDHLAVLY----QRDTLGIWISTE 276
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,942,987
Number of Sequences: 28952
Number of extensions: 220134
Number of successful extensions: 580
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -