SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C11
         (921 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...   142   4e-34
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    33   0.20 
At1g59580.2 68414.m06701 mitogen-activated protein kinase, putat...    30   2.5  
At1g59580.1 68414.m06700 mitogen-activated protein kinase, putat...    30   2.5  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    30   2.5  
At3g25130.1 68416.m03138 expressed protein                             29   3.3  
At3g03760.1 68416.m00382 LOB domain protein 20 / lateral organ b...    29   3.3  
At4g09680.1 68417.m01590 expressed protein                             29   5.7  
At2g10350.1 68415.m01087 Ulp1 protease family protein similar to...    29   5.7  
At1g51670.1 68414.m05821 expressed protein                             29   5.7  
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    28   7.6  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score =  142 bits (343), Expect = 4e-34
 Identities = 77/232 (33%), Positives = 135/232 (58%), Gaps = 8/232 (3%)
 Frame = +2

Query: 95  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ--YQHILDKAIKYGKDN 268
           L+ +   S +V DT  F+  + + PT AT + +L+L   G+    +++ +D A+      
Sbjct: 71  LNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMALADSSCA 130

Query: 269 G-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 445
           G  + E +++   +   V  G +++K++PGRVS EVDARL++D +  I K    + L+ E
Sbjct: 131 GLETTESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNE 190

Query: 446 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEAXVTLISPFVG 625
             +  +R+L K+ +TW+GI+AA+ LE + GI  ++T ++S  QA A ++A  ++I  FVG
Sbjct: 191 IDVPHDRLLFKIPATWQGIEAARLLESE-GIQTHMTFVYSFAQAAAASQAGASVIQIFVG 249

Query: 626 RILDWYVEHTKKT-----YEGKEDPGVVSVTKIYNYYKXFGYQTQVMGASFR 766
           R+ DW   H+  T      +  EDPG+  V + YNY   +GY++++M A+ R
Sbjct: 250 RLRDWARNHSGDTEIESAIKSGEDPGLALVKRSYNYIHKYGYKSKLMAAAVR 301


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 5/151 (3%)
 Frame = +2

Query: 59  GEPDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHIL 238
           GE +  R     L    +H  V  D   FEA       D     ++     G+++ + I 
Sbjct: 497 GELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIF 556

Query: 239 DKAIKYGKDNGSSIEEQVAETL-DMLSVLFGCEIL---KIIPGRVSVEVDARLSFDKDAS 406
           D+A  Y KD+   ++E+ A  L D L++  G   L   +++  ++  +V  R    ++  
Sbjct: 557 DRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDG 616

Query: 407 IAKAIKFIN-LFAEHGIKKERILIKLASTWE 496
             +  ++ + LF E        +++ A  W+
Sbjct: 617 CTEYEEYTDYLFPEESETTSLKILEAAHKWK 647


>At1g59580.2 68414.m06701 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK2) identical to mitogen-activated
           protein kinase homolog 2 (AtMPK2)[Arabidopsis thaliana]
           SWISS-PROT:Q39022; PMID:12119167
          Length = 376

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 809 MVSNHSRXFT-YFPVYGKM----HPLLGSGNQTSCNSCKFLSRKLLRGLPCPHKSSLYVQ 645
           M++NH R F   + VY  M    H ++ S    S + C++   +LLRGL   H +++  +
Sbjct: 98  MMANHKRSFKDVYLVYELMDTDLHQIIKSSQVLSNDHCQYFLFQLLRGLKYIHSANILHR 157

Query: 644 HTNP 633
              P
Sbjct: 158 DLKP 161


>At1g59580.1 68414.m06700 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK2) identical to mitogen-activated
           protein kinase homolog 2 (AtMPK2)[Arabidopsis thaliana]
           SWISS-PROT:Q39022; PMID:12119167
          Length = 376

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 809 MVSNHSRXFT-YFPVYGKM----HPLLGSGNQTSCNSCKFLSRKLLRGLPCPHKSSLYVQ 645
           M++NH R F   + VY  M    H ++ S    S + C++   +LLRGL   H +++  +
Sbjct: 98  MMANHKRSFKDVYLVYELMDTDLHQIIKSSQVLSNDHCQYFLFQLLRGLKYIHSANILHR 157

Query: 644 HTNP 633
              P
Sbjct: 158 DLKP 161


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 430 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SXCYTN 609
           QF C         FN + +H+  + S  R G E+     S + +L +P YC C   C  N
Sbjct: 100 QFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYC-CAEGCKNN 158

Query: 610 I 612
           I
Sbjct: 159 I 159


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 477 LIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFN 337
           + KILSFL P      + L+A      + +  L S S +T+P  +F+
Sbjct: 52  IFKILSFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFS 98


>At3g03760.1 68416.m00382 LOB domain protein 20 / lateral organ
           boundaries domain protein 20 (LBD20) identical to
           SP|Q9SRV3 LOB domain protein 20 {Arabidopsis thaliana}
          Length = 273

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 743 GSGNQTSCNSCKFLSRKLLRG-LPCPHKSS 657
           G+G  + C +CKFL RK + G +  PH  S
Sbjct: 45  GTGTASPCGACKFLRRKCVSGCIFAPHFGS 74


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +2

Query: 263 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDAR-LSFDKDASIAKAIKFINLF 439
           D  SSI+    + L   +    CE    +P   SV ++A  L +D   ++ +       F
Sbjct: 445 DRTSSIDVLTPDLLSDRNASRICEGHPGMPDCTSVFIEALVLPWDLICTVTEEEAAAPNF 504

Query: 440 AEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTL 556
            EH   +E    K   T  G+Q+   L   H I C +T+
Sbjct: 505 EEHDTSQEIRPHKRCKTNNGLQSQSFLSVPHEISCQMTI 543


>At2g10350.1 68415.m01087 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At1g44880, At3g42530, At4g19320,
           At5g36020, At4g03970, At3g43010 ; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1110

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -1

Query: 423 LIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 265
           LIAF  +  L  D L   ST     +   ++HPK  +S+ ++ A  S+++LP+
Sbjct: 252 LIAFRNIPGLL-DLLLDDSTSKTILLWKRLTHPKQVISLHQIHALESNLKLPM 303


>At1g51670.1 68414.m05821 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 441 LNMVLKKKEF*L--NWPPLGKEFKQPKSWRRSMESI 542
           LN  LKK       +WPPLG E K P S+  ++ S+
Sbjct: 85  LNFALKKGGIPRAEDWPPLGSESKTPSSYEPALVSM 120


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 743 GSGNQTSCNSCKFLSRKLLRGLPCPHKSSLYVQHTNPIYD 624
           GSG+ +  +S K+  RK  RG P   +  +  + T  +YD
Sbjct: 320 GSGSGSGRSSTKYDLRKSKRGFPSHGRKKIKYEFTESVYD 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,179
Number of Sequences: 28952
Number of extensions: 395374
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -