Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B12
         (1082 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29080.1 68416.m03641 hypothetical protein                          34   0.14 
At1g62250.2 68414.m07023 expressed protein                             30   2.3  
At1g62250.1 68414.m07022 expressed protein                             30   2.3  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   4.0  
At5g09400.1 68418.m01089 potassium transporter family protein si...    29   5.3  
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    29   7.1  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   7.1  
At4g22740.2 68417.m03281 glycine-rich protein                          28   9.3  
At4g22740.1 68417.m03280 glycine-rich protein                          28   9.3  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    28   9.3  
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to  C...    28   9.3  

>At3g29080.1 68416.m03641 hypothetical protein
          Length = 445

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 252 EGKEGRGYQGSREASDRKRQEEHHGTSPTSYGQRMERK 365
           E +EG GY    EA D +R+ +H  TS ++ G   ERK
Sbjct: 395 EAEEGSGYHQRWEALDSRRKHDHSRTSGSALGTGTERK 432


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 104 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 232
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 104 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 232
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
            extensin family protein similar to extensin-like protein
            [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
            contains leucine-rich repeats, Pfam:PF00560; contains
            proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 889  PXKXFSPVSPPXLFGXGSXPXPY*XRFF*XGSPPIYYFXKPXLXPXFTXXPEXXP 1053
            P   +SP  PP +      P P    +    SPP+YY+  P   P     P   P
Sbjct: 752  PCIEYSPPPPPTVH-YNPPPPPSPAHYSPPPSPPVYYYNSPPPPPAVHYSPPPPP 805


>At5g09400.1 68418.m01089 potassium transporter family protein
           similar to K+ transporter HAK5 [Arabidopsis thaliana]
           GI:7108597; contains Pfam profile PF02705: K+ potassium
           transporter; KUP/HAK/KT Transporter family member,
           PMID:11500563; Note: possible sequencing error causes a
           frameshift in the 4th exon|15810448|gb|AY056263
          Length = 858

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -1

Query: 290 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 111
           F +S+  S F+   +  ++A  ++   MTT  +SC    S+ LG    L+   HT+R   
Sbjct: 411 FFSSVPGSAFWPVLFIANIAALIASRTMTTATFSC-IKQSTALGCFPRLKI-IHTSRKFM 468

Query: 110 NKVSLILAQWLSL 72
            ++ + +  W  L
Sbjct: 469 GQIYIPVLNWFLL 481


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 772 GKXXGGXXGNXGGGFXGXPXGGF 704
           G   GG  GN GGG+ G   GG+
Sbjct: 157 GGGAGGYGGNSGGGYGGNAAGGY 179


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 451 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 359
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At4g22740.2 68417.m03281 glycine-rich protein
          Length = 356

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 760 GGXXGNXGGGFXGXPXGGFXRG 695
           GG  G   GGF G   GGF RG
Sbjct: 11  GGGFGGPFGGFGGGSFGGFGRG 32


>At4g22740.1 68417.m03280 glycine-rich protein
          Length = 356

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 760 GGXXGNXGGGFXGXPXGGFXRG 695
           GG  G   GGF G   GGF RG
Sbjct: 11  GGGFGGPFGGFGGGSFGGFGRG 32


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/54 (29%), Positives = 19/54 (35%)
 Frame = +2

Query: 704 KPPXWXPXEPPPXVTXXPTXXFSFXXYNPXXXPPXGXLTXLNXKXXPXPKXKTP 865
           KPP + P   PP +   PT  +S   Y P    P            P  K  TP
Sbjct: 74  KPPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTP 127


>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
           Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
          Length = 543

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 362 PFHPLSITGRRSSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVS 219
           P  PL   G    +   L  +   F+ SL  +P FS R   HL + VS
Sbjct: 79  PARPLPFIGHLHLLKQPLHRTFLSFSQSLGDAPIFSLRLGNHLTVVVS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,891
Number of Sequences: 28952
Number of extensions: 350415
Number of successful extensions: 1217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2695625888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)