Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B08
         (930 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein con...    31   0.82 
At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein con...    31   0.82 
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    29   4.4  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    29   4.4  
At1g72110.1 68414.m08335 expressed protein                             28   7.7  

>At5g26000.2 68418.m03094 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 456

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +1

Query: 94  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 261
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN   G+   + + AY V+
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59

Query: 262 RPQGR 276
             +GR
Sbjct: 60  GGRGR 64


>At5g26000.1 68418.m03093 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to Myrosinase precursor (Sinigrinase)
           (SP:P37702) [Arabidopsis thaliana]
          Length = 541

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +1

Query: 94  MKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGN---GY-EPIDNGAYYVD 261
           MK  M+  + LLA+A  +G+ +   +N P+  N  K +N +GN   G+   + + AY V+
Sbjct: 1   MKLLMLAFVFLLALATCKGDEFVCEENEPFTCNQTKLFN-SGNFEKGFIFGVASSAYQVE 59

Query: 262 RPQGR 276
             +GR
Sbjct: 60  GGRGR 64


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +1

Query: 130 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 300
           A  N Q     P +  P    P    NP  N Y+     +YYV +    P  +PT F
Sbjct: 790 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 846


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +1

Query: 130 AMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 300
           A  N Q     P +  P    P    NP  N Y+     +YYV +    P  +PT F
Sbjct: 792 ASGNTQPQSTMPYNQEPTQAQPNVLANPYDNQYQQPYTDSYYVPQVSHPPMQQPTMF 848


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 391 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 296
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,371,070
Number of Sequences: 28952
Number of extensions: 244214
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)