Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A07
         (1117 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    24   2.5  

>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 23.8 bits (49), Expect(3) = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 897 PPPPPPP 877
           PPPPPPP
Sbjct: 395 PPPPPPP 401



 Score = 21.8 bits (44), Expect(3) = 2.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 894 PPPPPPXXXK 865
           PPPPPP   K
Sbjct: 408 PPPPPPPGKK 417



 Score = 21.0 bits (42), Expect(3) = 2.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 891 PPPPPXXXKK 862
           PPPPP   KK
Sbjct: 421 PPPPPPMSKK 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,490
Number of Sequences: 28952
Number of extensions: 185501
Number of successful extensions: 4676
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2802287344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)