Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A01
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22610.1 68418.m02642 F-box family protein contains F-box dom...    29   3.8  
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    29   5.0  

>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 472

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 474 DLLQQLDSQCKQENIFSN--WLEEKVDLPSIFENISEVPERVDHNPRQR 614
           D L  L S C +EN++SN   LE  +    + E+++ V  ++D N R R
Sbjct: 168 DSLPSLKSMCLEENVYSNEASLESLISSCRVLEDLTIV--KIDDNVRDR 214


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = +1

Query: 103 TSVCLHAQYKNACQNGALTGQVSPSSQNTNITRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 279
           T VC+     N   N     Q SP + NT+I  H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 280 GLRPSICSLTMSAVCCSKLRISSMMIVICLKTFRALQRRSKS 405
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMV---RTLTRKKSRKSKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,720
Number of Sequences: 28952
Number of extensions: 296754
Number of successful extensions: 731
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)