Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030623sawa_D10_e76_08.seq
(1521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 44 3e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 44 3e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 39 0.010
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 38 0.023
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 38 0.023
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 38 0.023
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 36 0.053
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 35 0.16
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 34 0.21
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 34 0.21
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 33 0.49
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 30 4.6
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 6.1
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 29 6.1
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 29 8.1
At5g01280.1 68418.m00037 expressed protein 29 8.1
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 8.1
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 29 8.1
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 43.6 bits (98), Expect = 3e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPX-GEVKALYA 225
G +P G +G++L+ +TG L LP + + + P G+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPALVHVSAQPRLGQDDGPIV 241
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
+LAPTREL + G R T +GGAPK Q RD
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD 284
Score = 34.3 bits (75), Expect = 0.21
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +3
Query: 360 RGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
RG A GRL D E TN +R T EADR D G EP
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEP 331
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 43.6 bits (98), Expect = 3e-04
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPX-GEVKALYA 225
G +P G +G++L+ +TG L LP + + + P G+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKT--LAYLLPALVHVSAQPRLGQDDGPIV 241
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
+LAPTREL + G R T +GGAPK Q RD
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD 284
Score = 34.3 bits (75), Expect = 0.21
Identities = 20/45 (44%), Positives = 21/45 (46%)
Frame = +3
Query: 360 RGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
RG A GRL D E TN +R T EADR D G EP
Sbjct: 287 RGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEP 331
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 38.7 bits (86), Expect = 0.010
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPX-GEVKALYA 225
G +P G +G++L+ +TG L LP + + + P
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKT--LSYLLPAIVHVNAQPMLAHGDGPIV 175
Query: 226 XVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
VLAPTREL + G + T +GG PK Q RD
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRD 218
Score = 35.5 bits (78), Expect = 0.093
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
++G A GRL D E TN +R T EADR D G +P
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDP 265
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.023
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
QG+++V +TG G +P + + + VL+PTREL
Sbjct: 194 QGRDIVAIAKTGSGKTLGYL--IPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAV 251
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G T +GGAPK Q RD
Sbjct: 252 KFGRSSRISCTCLYGGAPKGPQLRD 276
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + ++ + EADR D G EP
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEP 323
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.023
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
QG+++V +TG G +P + + + VL+PTREL
Sbjct: 194 QGRDIVAIAKTGSGKTLGYL--IPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAV 251
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G T +GGAPK Q RD
Sbjct: 252 KFGRSSRISCTCLYGGAPKGPQLRD 276
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + ++ + EADR D G EP
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEP 323
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 37.5 bits (83), Expect = 0.023
Identities = 24/85 (28%), Positives = 35/85 (41%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
QG+++V +TG G +P + + + VL+PTREL
Sbjct: 194 QGRDIVAIAKTGSGKTLGYL--IPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAV 251
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G T +GGAPK Q RD
Sbjct: 252 KFGRSSRISCTCLYGGAPKGPQLRD 276
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + ++ + EADR D G EP
Sbjct: 278 ERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEP 323
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 36.3 bits (80), Expect = 0.053
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+G + Q EADR D G EP + + + PP
Sbjct: 272 ERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPP 331
Query: 534 G 536
G
Sbjct: 332 G 332
Score = 32.3 bits (70), Expect = 0.86
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Frame = +1
Query: 58 KPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXI---ISLPXGEVKALY-- 222
KP R A G++L+ QTG + I I P G V+ +Y
Sbjct: 168 KPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRG-VRGVYPL 226
Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
A +L+PTREL + + A+GG P +Q R+
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRE 270
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.7 bits (76), Expect = 0.16
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + + PP
Sbjct: 285 ERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 344
Query: 534 G 536
G
Sbjct: 345 G 345
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 223 AXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
A +L+PTREL + + A+GG P +Q R+
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRE 283
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.3 bits (75), Expect = 0.21
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + + PP
Sbjct: 277 ERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 336
Query: 534 G 536
G
Sbjct: 337 G 337
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 220 YAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
+A +L+PTREL + + A+GG P +Q R+
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.3 bits (75), Expect = 0.21
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEPXTXE-XHRPNTPPN 533
ERG A GRL D E+ + Q EADR D G EP + + + PP
Sbjct: 277 ERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPR 336
Query: 534 G 536
G
Sbjct: 337 G 337
Score = 30.3 bits (65), Expect = 3.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 220 YAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQARD 354
+A +L+PTREL + + A+GG P +Q R+
Sbjct: 231 FAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 33.1 bits (72), Expect = 0.49
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
Q +++V +TG G +P I + +LAPTREL
Sbjct: 471 QSRDIVAIAKTGSGKTLGYL--IPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEAL 528
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
G T +GGAPK Q ++
Sbjct: 529 RFGRSSRISCTCLYGGAPKGPQLKE 553
Score = 31.5 bits (68), Expect = 1.5
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + Q+ + EADR D G EP
Sbjct: 555 ERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEP 600
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 29.9 bits (64), Expect = 4.6
Identities = 20/85 (23%), Positives = 33/85 (38%)
Frame = +1
Query: 100 QGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAXVLAPTRELXXXXXXXXX 279
Q +++V +TG G +P + + + VL+PTREL
Sbjct: 265 QNRDIVAIAKTGSGKTLGYL--IPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEAL 322
Query: 280 ELGXXPNARXTXAHGGAPKREQARD 354
+ G +GGAPK Q ++
Sbjct: 323 KFGKSSKISCACLYGGAPKGPQLKE 347
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 357 ERGXXXFXAXXGRLXDPXEKGTTNXQRRTXXXXXEADRKXDTGSEP 494
ERG A GRL D E + + + EADR D G EP
Sbjct: 349 ERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEP 394
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 29.5 bits (63), Expect = 6.1
Identities = 23/101 (22%), Positives = 39/101 (38%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLPXGEVKALYAX 228
G +KP + QG++++ Q+G + + ++ EV+AL
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV---CQVVDTSSREVQAL--- 107
Query: 229 VLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQAR 351
+L+PTREL +G N + GG E R
Sbjct: 108 ILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIR 148
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 29.5 bits (63), Expect = 6.1
Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Frame = +1
Query: 49 GXKKPRTRSRXGXXRYAQGKNLVVXXQTGXRHNFGLYXYLP*XIXIISLP----XGEVKA 216
G KKP Q ++++ +TG LP I LP E +
Sbjct: 332 GYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFV--LPMLAYISRLPPMSEENETEG 389
Query: 217 LYAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQ 345
YA V+APTREL + R T GG EQ
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQ 432
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 29.1 bits (62), Expect = 8.1
Identities = 20/75 (26%), Positives = 23/75 (30%)
Frame = +1
Query: 541 PXAXRXKGXKEXTETXPRXXQRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPKXXPXPX 720
P + K T P+ P K PT P P P PK P P
Sbjct: 26 PKPPKPKPAPAPTPPKPKPTPAPTPPKPKPKPAPTPPKPKPAPAPTPPK---PKPAPAPT 82
Query: 721 PXXQXTRXTPTNPXP 765
P + PT P P
Sbjct: 83 PPKPKPKPAPTPPNP 97
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 480 TGSEPXTXEXHRPNTPPNGXP---XXXPXQRPXRXNGNA 587
TGS T +RP + PN P P +RP NG++
Sbjct: 172 TGSATSTRSNNRPMSAPNSKPGSRSSTPTRRPSTPNGSS 210
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Frame = +1
Query: 568 KEXTETXPRXXQRXDGPXQKXXTRPTNPXXXXXXKPNDPXXXXPK--XXPXPXPXXQXTR 741
K E+ + + + P + +P P KP P PK P P P Q T
Sbjct: 501 KPKPESPKQESSKQEPPKPEESPKPEPPKPEESPKPQPPKQETPKPEESPKPQPPKQETP 560
Query: 742 XTPTNPXP 765
+P P
Sbjct: 561 KPEESPKP 568
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 193 LPXGEVKALYAXVLAPTRELXXXXXXXXXELGXXPNARXTXAHGGAPKREQ 345
+P G V+AL +L+PTR+L ELG + R + GG +Q
Sbjct: 94 VPQGGVRAL---ILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQ 141
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,078,469
Number of Sequences: 28952
Number of extensions: 196228
Number of successful extensions: 343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
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