Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40152
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24850.1 68416.m03117 hypothetical protein contains Pfam prof...    31   1.1  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   7.5  
At3g44250.1 68416.m04749 cytochrome P450 family protein CYTOCHRO...    28   7.5  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    27   9.9  
At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger) fa...    27   9.9  
At2g22340.1 68415.m02651 hypothetical protein                          27   9.9  

>At3g24850.1 68416.m03117 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 102 NTSFKSDTCKS--KLNELPSFATLDDLHLKPSRQKRNPASATQPCRMDTCFDFLNVE 266
           N  F S T  S   LN+LP+ + ++D     S+ K    S+++PC     FD+   E
Sbjct: 72  NGGFISFTSSSLIDLNQLPTDSEIEDPQTSDSQMKTLQNSSSEPCTSLVLFDYKTAE 128


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 684 VAAGGTPPFSGCSL*NNGQ*NVKSLTKHYFGSTCSGQYS 568
           VA   T P  G S  ++ +  V +L  +YFGS C G YS
Sbjct: 2   VAVDSTFPSHGSSY-SSRRKKVSALEPNYFGSMCMGVYS 39


>At3g44250.1 68416.m04749 cytochrome P450 family protein CYTOCHROME
           P450 71B7 - Arabidopsis thaliana, EMBL:X97864
          Length = 499

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 602 CFVRDLTFHWPLFHKEHPEKGGVPPAATVQPISGSTEAFG 721
           CF+  L     LF K  P KG +PP     PI G+    G
Sbjct: 6   CFLLLLPLSLILFKKLLPSKGKLPPGPIGLPIIGNLHQLG 45


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 269 DPKIFVYPSDGTVSASYRK---VLSVIRESRYVTRDPNEACLF 388
           DP  F Y +   V+  Y         IRESR+ T DP+EA LF
Sbjct: 113 DPNTF-YQTPRKVTGKYASEGYFFQNIRESRFRTLDPDEADLF 154


>At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 207

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 600 YFGSTCSGQYSFTWVKSQRIFSIVWPSAS 514
           YF ST  G Y +   +S+++ S++ PS+S
Sbjct: 41  YFYSTTGGSYEYEGDQSRKVSSVMSPSSS 69


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 278 FLDHFHI*KVETCIHTTRLCCRSRIAFLSRWFKV 177
           F+ HF    V   I ++ + CRS +  L RW +V
Sbjct: 42  FISHFFWISVINMIESSHIRCRSHLIMLIRWNQV 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,364,862
Number of Sequences: 28952
Number of extensions: 370848
Number of successful extensions: 1036
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)