Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40140
(893 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_50284| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_22286| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 31 1.7
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49) 31 1.7
SB_6205| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_5214| Best HMM Match : SAP (HMM E-Value=0.8) 31 1.7
SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24) 31 1.7
SB_243| Best HMM Match : Lectin_C (HMM E-Value=1.8e-19) 31 1.7
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 27 2.6
SB_19570| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47) 29 3.8
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 29 3.8
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 29 3.8
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47) 29 3.8
SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 365 CVFFLSSPGASVDVASSDCRCHAGIDGGSVRLFSDGNDS 249
C F + PG+ D S CRC AG G L DG S
Sbjct: 614 CDPFGTLPGSVCDAGSGQCRCKAGSTGLRCHLCEDGYHS 652
>SB_50284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 31.5 bits (68), Expect = 0.95
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+QE +L+ R DP S+PA +R + + TS E
Sbjct: 116 IDQEDGTTLRIRIDPESVPADKRNASDETSEE 147
>SB_22286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 232 RDFIEQESFPSLKSRTDPPSIPAWQRQSEEATSTEAPGEDKKKT 363
RDF+ E S + +DP ++PA R+ + T+ E E + T
Sbjct: 75 RDFVRNEQCSSSLTSSDPDAVPADARELQHVTTLERTAEHVRGT 118
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 26 WFYKNCVRHLIFVDQPKRKTTNECLEEVRKSLEDLNTN 139
W YK CV L P KT+++ + +++SLED N N
Sbjct: 388 WDYKGCVTRLSDTVIPTLKTSDD-INALKESLEDANEN 424
>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
Length = 1205
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+QE +L+ R DP S+PA R + + TS E
Sbjct: 957 IDQEDGTTLRIRIDPESVPADTRNASDETSEE 988
>SB_6205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 35/55 (63%)
Frame = +2
Query: 86 TNECLEEVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTIKGDIASVKGILLNR 250
+N+ L E +K + L+ ++ + + ++ L ++ S++ +K +I S+KG+LLNR
Sbjct: 76 SNKLLIEQQKQIICLSADLSSTQEKVEQLPTESY--SVNDLKSEIISLKGLLLNR 128
>SB_5214| Best HMM Match : SAP (HMM E-Value=0.8)
Length = 660
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+QE +L+ R DP S+PA R + + TS E
Sbjct: 387 IDQEDGTTLRIRIDPESVPADTRNASDETSEE 418
>SB_3966| Best HMM Match : DUF720 (HMM E-Value=0.24)
Length = 250
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+QE +L+ R DP S+PA R + + TS E
Sbjct: 2 IDQEDGTTLRIRIDPESVPADTRNASDETSEE 33
>SB_243| Best HMM Match : Lectin_C (HMM E-Value=1.8e-19)
Length = 135
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 395 PDSERWLRARCVFF-LSSPGASVDVASSDCR 306
P+ + R C FF L+SPG S D A DC+
Sbjct: 5 PEGWKVFRGSCYFFNLASPGLSYDQAREDCK 35
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 26.6 bits (56), Expect(2) = 2.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 259 PSLKSRTDPPSIPAWQRQSEE 321
P L+ R PP + AWQR+ ++
Sbjct: 149 PPLQRRARPPVLDAWQRREQQ 169
Score = 21.8 bits (44), Expect(2) = 2.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +1
Query: 94 MPRGGSEKSRRFEYQCLRTEGR 159
+P +++ RRF Y+ +GR
Sbjct: 127 LPTDANQEGRRFRYRTTLVDGR 148
>SB_19570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 26.6 bits (56), Expect(2) = 3.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 259 PSLKSRTDPPSIPAWQRQSEE 321
P L+ R PP + AWQR+ ++
Sbjct: 149 PPLQRRARPPVLDAWQRREQQ 169
Score = 21.8 bits (44), Expect(2) = 3.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +1
Query: 94 MPRGGSEKSRRFEYQCLRTEGR 159
+P +++ RRF Y+ +GR
Sbjct: 127 LPTDANQEGRRFRYRTTLVDGR 148
>SB_56799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 166 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 197
>SB_47476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 198 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 229
>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 239 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 270
>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 528
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 280 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 311
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 98 LEEVRKSLEDLNTNVFALKGELNSLQQNTFRCSLDTI--KGDIASVKGILLNR 250
+ E++ L + T++ AL+GEL + + N + +TI K + +G+LL +
Sbjct: 102 IAEIQGLLSEKETSILALRGELEAEKANAEALATETIKLKESLDEAQGLLLGK 154
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 32 YKNCVRHLIFVDQPKRKTTNECLEEVRKSLED--LNTNVFALKGELNSLQQNTFRCSLD 202
Y C R + + ECL V K LE+ NT+++ ++ L+ L +N+ C D
Sbjct: 273 YIYCARSISVACLSALQRHGECLALVNKRLEEESTNTDLYIMRARLHELFRNSTLCYYD 331
>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 244 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 275
>SB_34445| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 371
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 123 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 154
>SB_19755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 373 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 404
>SB_13086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 241 IEQESFPSLKSRTDPPSIPAWQRQSEEATSTE 336
I+Q+ +L+ R DP S+PA R + + TS E
Sbjct: 2 IDQDDGTTLRIRIDPESVPADTRNASDETSEE 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,265,834
Number of Sequences: 59808
Number of extensions: 543208
Number of successful extensions: 1583
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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