Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40134
         (903 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    28   9.7  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    28   9.7  

>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 548 HLKRTCLDVTNVTGRVKNSGNVVWNVTSLS 637
           +L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 239 NLRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 548 HLKRTCLDVTNVTGRVKNSGNVVWNVTSLS 637
           +L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 239 NLRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,283
Number of Sequences: 28952
Number of extensions: 291888
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)