Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40132
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   2.0  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    27   3.6  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.2  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 482 RDSRAFPFDSTSPTC*TSLVMKKGRHQSRSWEPSSSKTESRYRARSRSVQARRCPW 649
           R    FPF     T     V KK   ++ +  PSSSK +  Y+   R ++    PW
Sbjct: 216 RSGYIFPFQRVGAT-----VPKKRLVETETPPPSSSKLKEDYKDSKREMKRSNTPW 266


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 735 NGNLNGCSVARIWLRTSSPPDGDTLTAKFQSFPSSRVT 848
           +G+L+      IWL   S P   T   KFQ + + +V+
Sbjct: 276 SGDLSIADFRNIWLEGQSDPPSFTKNQKFQQYGAQKVS 313


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 580 IVKQNGKQVSGEISVSPGTPLSMGDIPEQRVGQRLWPSG--DYMHVTDT 720
           I ++NG   S   SV+PGTP S+  +  Q   Q    SG  D  H  +T
Sbjct: 263 IDQKNGSHAS---SVAPGTPSSLASVSTQATPQHQNSSGRTDSFHSLNT 308


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 247 LNYFVTFRFIIESVSKSFFFIITRKS*RFLFMV 345
           ++ F TF+F IES ++ FF ++   S    +++
Sbjct: 123 MDIFKTFKFCIESTAQPFFDLVLELSTNLPYLI 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,838
Number of Sequences: 5004
Number of extensions: 83589
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)