Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40126
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 39 0.003
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 39 0.003
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.013
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 35 0.052
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.84
Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical p... 30 1.5
Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 30 1.9
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 30 1.9
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 29 2.6
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.6
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 29 2.6
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 29 2.6
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 29 2.6
Z83122-11|CAB05603.2| 648|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81073-10|CAB03035.2| 648|Caenorhabditis elegans Hypothetical p... 29 4.5
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 29 4.5
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 28 5.9
U22831-9|AAN63388.1| 412|Caenorhabditis elegans Hypothetical pr... 28 5.9
U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 28 7.8
U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF125952-4|AAD14698.1| 330|Caenorhabditis elegans Hypothetical ... 28 7.8
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 28 7.8
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 7.8
AC006722-10|ABP57811.1| 330|Caenorhabditis elegans Hypothetical... 28 7.8
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWS 77
IS CGRY+VSG TD VKVWS
Sbjct: 302 ISQCGRYIVSGSTDRTVKVWS 322
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWS 77
IS CGRY+VSG TD VKVWS
Sbjct: 304 ISQCGRYIVSGSTDRTVKVWS 324
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWS 77
IS CGRY+VSG TD VKVWS
Sbjct: 304 ISQCGRYIVSGSTDRTVKVWS 324
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 37.1 bits (82), Expect = 0.013
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHI 89
SPCG+YL + D VK+W++DH+
Sbjct: 96 SPCGKYLGTSSADKTVKIWNMDHM 119
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTY 143
DI+P + V+G D VKVW LD D H S ++ V +
Sbjct: 593 DIAPSSKLCVTGSVDKSVKVWGLDFGDCHKSFHAHDDAVTSVLF 636
>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
protein F17C11.10 protein.
Length = 1101
Score = 34.7 bits (76), Expect = 0.068
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLDHID 92
+SPCG+YL S D + VW+ D +D
Sbjct: 253 LSPCGKYLASSTMDNQIAVWNSDELD 278
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSLDHI 89
SP GRY+ SG D +K+W +D +
Sbjct: 116 SPDGRYMGSGSADCSIKIWRMDFV 139
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVW 74
G YL SG DG+V++W
Sbjct: 244 GAYLASGSYDGIVRIW 259
>Z74030-18|CAA98448.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
D+ P ++ SGG D ++K+W L
Sbjct: 191 DVEPGNQWFASGGADRIIKIWDL 213
>Z73970-6|CAA98247.1| 494|Caenorhabditis elegans Hypothetical
protein D1054.15 protein.
Length = 494
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVWSL 80
D+ P ++ SGG D ++K+W L
Sbjct: 191 DVEPGNQWFASGGADRIIKIWDL 213
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVT 140
G+ L+S D VKVW+++ + H +D + D V+
Sbjct: 102 GKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVS 139
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVT 140
G+ L+S D VKVW+++ + H +D + D V+
Sbjct: 102 GKILISASNDTTVKVWNIERDNKHGFIDCIRTHKDYVS 139
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
I P G YL+SG DG +++W+++
Sbjct: 608 IDPNGLYLLSGSHDGSIRMWNME 630
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVWSLD 83
I P G YL+SG DG +++W+++
Sbjct: 608 IDPNGLYLLSGSHDGSIRMWNME 630
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
SP YLVSG DG ++VW+
Sbjct: 223 SPDANYLVSGSKDGFIEVWN 242
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSLDH 86
GRY+ +GG D VK+W +++
Sbjct: 337 GRYIFTGGNDNQVKIWDVEN 356
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 27 GRYLVSGGTDGVVKVWSL 80
GR++ +GG DGV ++W +
Sbjct: 134 GRWMYTGGDDGVCRIWEM 151
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSLDHIDWHSSL 107
RY+VS D +KVWS+D +++ +L
Sbjct: 356 RYIVSASGDRTIKVWSMDTLEFVRTL 381
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
SP YLVSG DG ++VW+
Sbjct: 223 SPDANYLVSGSKDGFIEVWN 242
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 30 RYLVSGGTDGVVKVWSLDHIDWHSSL 107
RY+VS D +KVWS+D +++ +L
Sbjct: 356 RYIVSASGDRTIKVWSMDTLEFVRTL 381
>Z83122-11|CAB05603.2| 648|Caenorhabditis elegans Hypothetical
protein F30F8.8 protein.
Length = 648
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SPCGRY+VS G + +W L
Sbjct: 528 SPCGRYIVSLDAIGNLMIWDL 548
>Z81073-10|CAB03035.2| 648|Caenorhabditis elegans Hypothetical
protein F30F8.8 protein.
Length = 648
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWSL 80
SPCGRY+VS G + +W L
Sbjct: 528 SPCGRYIVSLDAIGNLMIWDL 548
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 21 PCGRYLVSGGTDGVVKVWSL 80
P G++++SG DG + VWS+
Sbjct: 437 PLGKHIISGSEDGRILVWSI 456
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVWS 77
S CG+YL +G D +KVW+
Sbjct: 222 SYCGKYLGTGSADKQIKVWN 241
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 36 LVSGGTDGVVKVWSLDHIDW 95
+VSGG DG +K+WSL I +
Sbjct: 337 IVSGGDDGELKIWSLKTIQF 356
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 384 IKTYVVVFKQMNLYVFQFIHL 446
I +VV+FKQ + + QF+HL
Sbjct: 142 ISNFVVIFKQQSFLLLQFLHL 162
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 384 IKTYVVVFKQMNLYVFQFIHL 446
I +VV+FKQ + + QF+HL
Sbjct: 145 ISNFVVIFKQQSFLLLQFLHL 165
>U22831-9|AAN63388.1| 412|Caenorhabditis elegans Hypothetical
protein F47D12.9b protein.
Length = 412
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDC 167
++FD R++ + G+DG V+ WSL D S+ N++ + + +Y DC
Sbjct: 337 VFFDKEE--RFVFAAGSDGYVRGWSLTSGDMLCSVKTPNHS--NPIFPRAVYSDC 387
>U22831-8|AAK20070.2| 545|Caenorhabditis elegans Hypothetical
protein F47D12.9a protein.
Length = 545
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDC 167
++FD R++ + G+DG V+ WSL D S+ N++ + + +Y DC
Sbjct: 470 VFFDKEE--RFVFAAGSDGYVRGWSLTSGDMLCSVKTPNHS--NPIFPRAVYSDC 520
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 15 ISPCGRYLVSGGTDGVVKVW 74
ISP G Y SG T G +++W
Sbjct: 67 ISPTGFYCASGDTQGNIRIW 86
>Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical
protein K02B12.3 protein.
Length = 425
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 3 IYFDISPCGRYLVSGGTDGVVKVWS 77
+ FD S G+ +GG DG +++W+
Sbjct: 148 VRFDKSSRGKIFATGGADGHIRIWN 172
>U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical
protein ZK430.7 protein.
Length = 444
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 42 SGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVT 140
SG DG VK+W+L + ++LD +D++
Sbjct: 84 SGARDGQVKIWNLASRECQATLDAHRGLVNDIS 116
>AF125952-4|AAD14698.1| 330|Caenorhabditis elegans Hypothetical
protein C01B4.6 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 203 IGYRIWPISFHRPDKIFGEKTNNEAVDSSSDDSINQYDIRYSSHSENCL 349
+GYR W + H P+ + NE D D+ + D+ Y+ + N L
Sbjct: 98 LGYRKWEVVRHAPESVSFSVRANEQDDGLPGDA--KIDVTYTVNDRNQL 144
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 12 DISPCGRYLVSGGTDGVVKVW 74
D SP G +VSGG D V+K+W
Sbjct: 451 DWSPEGTKVVSGGKDKVLKLW 471
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 18 SPCGRYLVSGGTDGVVKVW 74
SPCG +L G D V+ +W
Sbjct: 263 SPCGSFLSVAGDDNVITIW 281
>AC006722-10|ABP57811.1| 330|Caenorhabditis elegans Hypothetical
protein Y19D10A.16 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 203 IGYRIWPISFHRPDKIFGEKTNNEAVDSSSDDSINQYDIRYSSHSENCL 349
+GYR W + H P+ + NE D D+ + D+ Y+ + N L
Sbjct: 98 LGYRKWEVVRHAPESVSFSVRANEQDDGLPGDA--KIDVTYTVNDRNQL 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,165
Number of Sequences: 27780
Number of extensions: 356768
Number of successful extensions: 1030
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -