Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30121
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530...    29   4.1  
12_01_0105 - 823302-823770,823902-824006,824149-824540                 28   9.4  
05_03_0147 - 8895516-8895623,8895751-8895756,8895987-8896118,889...    28   9.4  
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357...    28   9.4  

>11_01_0656 -
           5301048-5301441,5301779-5301976,5302056-5302228,
           5302691-5302935,5303014-5303191,5303578-5303760,
           5303858-5303962,5304621-5304758,5304846-5305802
          Length = 856

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 73  QPMSESS-TQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALP 228
           QP+ ES  +++  N    S    P  V++I+  EK+ +AN  R  ++ +N  P
Sbjct: 232 QPIDESKRSKLGKNSRTLSRLLSPLEVRQILKAEKECQANQLRPEQLIVNGCP 284


>12_01_0105 - 823302-823770,823902-824006,824149-824540
          Length = 321

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 79  MSESSTQINHNKEEQSTTKIPDS--VKKIILMEKDNEANANRKSRIDLNALPTRQY 240
           +SE   Q++ +        + D   V+KI+    D++ +++ K+  D NA P RQ+
Sbjct: 73  ISELQLQLSSDSPHDDDGHLDDKRRVRKIVSSSSDDDDHSSSKAAEDHNAKPLRQH 128


>05_03_0147 -
           8895516-8895623,8895751-8895756,8895987-8896118,
           8896499-8896600,8896822-8896858,8896950-8897242,
           8898293-8898418,8898590-8898726,8898818-8898889,
           8898972-8899020,8899242-8899312,8899395-8899505,
           8899602-8899929,8899999-8900172,8900519-8900578,
           8900622-8900861,8900986-8901048,8901123-8901125
          Length = 703

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +1

Query: 82  SESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVYP 261
           S+    I  +  E +  +I    + +   E+ N  N N++   DL   P  Q+L ++ + 
Sbjct: 433 SDDDGFIYFHSVEDTPIEIIRGYENVGTKERTNCQNPNKRLFQDLTNSPDIQFLGESKFA 492

Query: 262 YCCK 273
            CCK
Sbjct: 493 DCCK 496


>04_03_0362 +
           14934236-14934541,14935549-14935647,14935736-14935798,
           14935878-14935940,14937242-14937362,14937472-14937872,
           14937968-14938141,14938252-14938570,14938659-14938735,
           14938808-14938877,14938951-14939007,14939100-14939314,
           14939436-14939561,14939649-14939944,14940032-14940203,
           14940300-14940398,14940471-14940602,14940692-14940792,
           14941391-14941580,14941819-14941842
          Length = 1034

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 187 NANRKSRIDLNALPTRQYLDQTVYPYCCKV 276
           N  ++   D+   P  +YL  +++P CCKV
Sbjct: 687 NVKKRRFDDVTNSPDVEYLGHSIFPDCCKV 716


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,021,168
Number of Sequences: 37544
Number of extensions: 328921
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)