BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10502 (793 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_03_0090 - 12347165-12348349 30 1.8 05_01_0264 + 2030080-2031270 30 2.4 01_02_0051 - 10655867-10657057 30 2.4 04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 28 9.8 >01_03_0090 - 12347165-12348349 Length = 394 Score = 30.3 bits (65), Expect = 1.8 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +3 Query: 6 RTSTYGHFGR--AGFPWESPKPLIVE 77 +T+ YGHFGR F WE KPL E Sbjct: 365 KTAAYGHFGREDPDFTWEVVKPLKYE 390 >05_01_0264 + 2030080-2031270 Length = 396 Score = 29.9 bits (64), Expect = 2.4 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = +3 Query: 6 RTSTYGHFGR--AGFPWESPKPL 68 +T+ YGHFGR F WE KPL Sbjct: 367 KTAAYGHFGRDDPDFTWEVVKPL 389 >01_02_0051 - 10655867-10657057 Length = 396 Score = 29.9 bits (64), Expect = 2.4 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = +3 Query: 6 RTSTYGHFGR--AGFPWESPKPL 68 +T+ YGHFGR F WE KPL Sbjct: 367 KTAAYGHFGREDPDFTWEVVKPL 389 >04_03_0694 + 18781776-18781994,18782475-18782648,18782743-18783057, 18783791-18785569,18786334-18786651,18787052-18787105 Length = 952 Score = 27.9 bits (59), Expect = 9.8 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 291 KNTYLITMNLVNERSSDLSGITVPLARF*SHYSLKRDTGDAAPSLQ*HT--YISVYYILM 118 KN Y + +NLV + +D + L ++ H K++ D A S HT ++ Y++ Sbjct: 344 KNLYTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEY-DEAMSQYIHTIGHLEPSYVIQ 402 Query: 117 EYL 109 ++L Sbjct: 403 KFL 405 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,154,480 Number of Sequences: 37544 Number of extensions: 356062 Number of successful extensions: 622 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 622 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2138915688 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -