Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10502
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.066
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)                      29   5.7  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    28   7.5  

>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 9   TSTYGHFGRAGFPWESPKPL 68
           TST+GHF + GFPWE PK L
Sbjct: 408 TSTFGHF-KPGFPWEEPKKL 426


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   QRTSTYGHFGRAGFPWESPKPL 68
           Q++  YGHF + GF WE+PKPL
Sbjct: 385 QKSCVYGHF-KPGFTWETPKPL 405


>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
          Length = 852

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 340 SNSEMTAPRFLLCF*TKEYLSNYNEPRK*TVIR 242
           +N +   P+FL  + TKEYL  +N+     V+R
Sbjct: 423 ANGDRPMPQFLASYRTKEYLKEWNQDEFDAVVR 455


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 702  NYLANLQC---GTIFAVKRKKAKLNFVSFSFTRSTVTQPEK*FTLQKIHSTYIIKLITKN 532
            NY  NL      T  +V  +  +LNF   S TRST+  P K F L+   ++Y+ +L  K 
Sbjct: 1711 NYSVNLTITFTATDNSVSSRCGELNFTGLSGTRSTIGLPLKEF-LE--GASYVFRL--KI 1765

Query: 531  IRDCRQSIT 505
            ++D R + T
Sbjct: 1766 LKDARTAFT 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,197,931
Number of Sequences: 59808
Number of extensions: 457883
Number of successful extensions: 1048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)