BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV10466 (587 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 84 1e-17 SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 68 1e-12 SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom... 27 1.5 SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 6.2 >SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit Rpb11|Schizosaccharomyces pombe|chr 1|||Manual Length = 123 Score = 84.2 bits (199), Expect = 1e-17 Identities = 35/69 (50%), Positives = 48/69 (69%) Frame = +3 Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434 KEDHTL NM+ +QLL D +VLFAGYK+PHPL H F+LR+QT D +P++ ++A L + Sbjct: 36 KEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLIT 95 Query: 435 ELSLFEERF 461 L + F Sbjct: 96 HLEEIKVNF 104 Score = 27.1 bits (57), Expect = 2.0 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +1 Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258 MN P +E L G KV E D+K NAA+ T++K Sbjct: 1 MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEK 36 >SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase I and III subunit Rpc19 |Schizosaccharomyces pombe|chr 1|||Manual Length = 125 Score = 67.7 bits (158), Expect = 1e-12 Identities = 31/73 (42%), Positives = 41/73 (56%) Frame = +3 Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434 KEDHTLGN +R+ ++K+P+V F GY IPHP E K RIQT T + + DL Sbjct: 41 KEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLID 100 Query: 435 ELSLFEERFKEAI 473 E+F E + Sbjct: 101 LCDAVTEKFTEQL 113 >SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 230 Score = 27.5 bits (58), Expect = 1.5 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +3 Query: 294 LLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413 L K PK++ + +++P E KFV+ ++ E+++N Sbjct: 41 LTKIPKIISSSFELPSYFEKKFVMGLKKDELVENSESYIN 80 >SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 935 Score = 25.4 bits (53), Expect = 6.2 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +3 Query: 357 FVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEA 470 + + + T DY + A+ D+TS +S F++ F+ A Sbjct: 361 YTILVNTLHDYIKVISIDEALLDITSSVSSFQDCFEIA 398 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,961,812 Number of Sequences: 5004 Number of extensions: 35418 Number of successful extensions: 83 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 83 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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