Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10466
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical pr...   111   4e-25
Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical p...    62   3e-10
Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical po...    29   1.9  
AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.        27   7.5  
U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane p...    27   7.5  
U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein...    27   7.5  
U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein...    27   7.5  
X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic int...    27   9.9  
U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate fi...    27   9.9  
U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate fi...    27   9.9  

>Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical
           protein W01G7.3 protein.
          Length = 122

 Score =  111 bits (267), Expect = 4e-25
 Identities = 52/75 (69%), Positives = 60/75 (80%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           KEDHTLGNM++ QLLKDP+VLFAGYK PHPLEHK +LRIQTT++ TP +A   AITDL  
Sbjct: 36  KEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVG 95

Query: 435 ELSLFEERFKEAIKE 479
           ELSL E R   AIK+
Sbjct: 96  ELSLLEHRIDAAIKK 110



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/37 (67%), Positives = 28/37 (75%)
 Frame = +1

Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
           MNAP  FESFLL D +KK   E+DTKV NAAIFT+ K
Sbjct: 1   MNAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMK 36


>Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical
           protein F58A4.9 protein.
          Length = 144

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/77 (35%), Positives = 42/77 (54%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           +EDHT+GN I+H L +  +V F GY +PHPLE K + R+QT       E    A   +  
Sbjct: 67  EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQ 126

Query: 435 ELSLFEERFKEAIKEKK 485
             S    +F+E+ ++ +
Sbjct: 127 IFSTIRGKFEESYEQSQ 143


>Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical
           protein R07D5.1 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLVTG 321
           V   IH   + C++   + +E  F+F W W+L  G
Sbjct: 383 VLGNIHRHTVQCVLMINMFNEKIFLFLWFWFLTCG 417


>Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical
           polypeptide protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLVTG 321
           V   IH   + C++   + +E  F+F W W+L  G
Sbjct: 383 VLGNIHRHTVQCVLMINMFNEKIFLFLWFWFLTCG 417


>AF025471-7|AAB71066.3|  161|Caenorhabditis elegans Hypothetical
           protein R52.9 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 331 RYHIHWNINLYSEFKQHQTIHHRK 402
           RY+I WN+N Y+ FK +  + H K
Sbjct: 31  RYNIPWNLNRYNFFKGNFQMSHCK 54


>Z50755-1|CAB61030.2|  386|Caenorhabditis elegans Hypothetical
           protein R12H7.1 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLV 327
           V   +H   + C++   + +E  F+F W WY +
Sbjct: 260 VLGNVHRHTVQCVLMINMFNEKIFLFLWFWYFL 292


>U93195-1|AAB51534.1|  386|Caenorhabditis elegans UNC-9 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLV 327
           V   +H   + C++   + +E  F+F W WY +
Sbjct: 260 VLGNVHRHTVQCVLMINMFNEKIFLFLWFWYFL 292


>U59212-1|AAB09671.1|  428|Caenorhabditis elegans transmembrane
           protein protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLV 327
           V   +H   + C++   + +E  F+F W WY +
Sbjct: 253 VLGNVHHHTVQCVLMINMFNEKIFLFLWFWYFM 285


>U39677-5|AAN71843.1|  383|Caenorhabditis elegans Innexin protein 1,
           isoform b protein.
          Length = 383

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLV 327
           V   +H   + C++   + +E  F+F W WY +
Sbjct: 253 VLGNVHHHTVQCVLMINMFNEKIFLFLWFWYFM 285


>U39677-4|AAN71842.1|  428|Caenorhabditis elegans Innexin protein 1,
           isoform a protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 425 VCNGIHERFLWCIV*CCLNSEYKFMFQWMWYLV 327
           V   +H   + C++   + +E  F+F W WY +
Sbjct: 253 VLGNVHHHTVQCVLMINMFNEKIFLFLWFWYFM 285


>X70830-1|CAA50178.1|  534|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 381 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 485
           SD      + NAI D  SE+ +   RFK+   E+K
Sbjct: 148 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 182


>U49831-7|AAA93408.1|  558|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform a protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 381 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 485
           SD      + NAI D  SE+ +   RFK+   E+K
Sbjct: 148 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 182


>U49831-6|AAA93407.1|  589|Caenorhabditis elegans Intermediate
           filament, b protein1, isoform b protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 381 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 485
           SD      + NAI D  SE+ +   RFK+   E+K
Sbjct: 179 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,759,406
Number of Sequences: 27780
Number of extensions: 199261
Number of successful extensions: 415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)