Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30200
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    28   6.8  
At3g08650.2 68416.m01005 metal transporter family protein contai...    28   6.8  
At3g08650.1 68416.m01004 metal transporter family protein contai...    28   6.8  

>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 484  VKSINQINSLLLCLQI*NNEKSSRV*HKTLIFKT--SLFLDRFCFHLLGAFIQFWEDSEK 311
            VKS+N  N++ L   I      S++  K L+  T   ++ D FCFHL GA   F E+ EK
Sbjct: 935  VKSVNIDNAVTLSGVI------SQIFDKALMEPTFCEMYAD-FCFHLSGALPDFNENGEK 987


>At3g08650.2 68416.m01005 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 619

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 125 DKCELDNYCVLCCGNI*HKGWQIISSGVNVELTNDSV 235
           D   LD+  V+ CG +    WQ+I   V +E    SV
Sbjct: 549 DYSGLDHVMVVACGGLLPSFWQVIKRAVRLERRKGSV 585


>At3g08650.1 68416.m01004 metal transporter family protein contains
           ZIP Zinc transporter domain, Pfam:PF02535
          Length = 595

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 125 DKCELDNYCVLCCGNI*HKGWQIISSGVNVELTNDSV 235
           D   LD+  V+ CG +    WQ+I   V +E    SV
Sbjct: 525 DYSGLDHVMVVACGGLLPSFWQVIKRAVRLERRKGSV 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,289
Number of Sequences: 28952
Number of extensions: 248924
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)