Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30195
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0587 - 10948888-10949124,10949281-10949393,10949830-109502... 35 0.043
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 0.53
07_01_1113 - 10292781-10293299 30 1.2
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232... 30 1.6
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 29 2.1
06_03_1480 - 30432718-30432996,30433151-30434123,30434251-304345... 29 2.1
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 29 2.1
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 29 3.7
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 28 4.9
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522... 28 4.9
03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071 28 4.9
11_02_0052 + 7788655-7789850,7789921-7790011 28 6.5
>09_02_0587 -
10948888-10949124,10949281-10949393,10949830-10950293,
10951223-10951766,10951902-10951971
Length = 475
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = +2
Query: 356 VEKFDMGPKACDWCPVLVGSELITRVNCSSNCFRGRRALGPGQFP*RGLHCGTSFLGGXK 535
V F G + C P + G++ + RV + + G+ + QF L+ G ++ K
Sbjct: 79 VRSFPSGVRNCYALPTVAGAKYLVRVRSAYGNYDGKNSSSTIQFD---LYLGVNYWATVK 135
Query: 536 RTQRSFRKL*RSSWARWVP 592
F + +WA WVP
Sbjct: 136 DPWNEFHEALFVAWASWVP 154
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF +PK+ E FD P+AC W
Sbjct: 553 LNFSHPKIAENFD--PRACGW 571
>07_01_1113 - 10292781-10293299
Length = 172
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Frame = -2
Query: 586 PASPRAPLKLSERSLGALXASKKARPAM*PASRKLPGTQRASSPKAIRRAI----NARY* 419
P+SPRA RS ++ A+ K P + PG+ R P+ +R + + +
Sbjct: 80 PSSPRA----QPRSCSSVDAATKGNPPRSARTTSAPGSLRL--PEVAQRVVELLHHRHWW 133
Query: 418 F*PH*HRTPITGLGAHVELLNNFGITEVKISAVVTE 311
F P ++ LG H E N F + +KI +V E
Sbjct: 134 FGPWALGLGLSALGPHFEDDNRFNLKPIKIISVNEE 169
>10_08_0199 +
15721585-15722109,15722135-15722740,15723084-15723273,
15723907-15724175
Length = 529
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 231 NLSNWGSKSTRQRLHEA--INVRSSTCISSVTTALILTSVIPKLLRSSTWAPRPVI 392
N+ +W S+ ++ L ++ +S ++ TT ++LT I K+ R + P+P +
Sbjct: 60 NMLSWKSRGSKDLLFRVCVVSAVASALFTNDTTCVVLTEFILKVARQNNLPPQPFL 115
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP +V+ FD P AC W
Sbjct: 513 LNFSNPVIVKNFD--PHACGW 531
>06_03_1480 -
30432718-30432996,30433151-30434123,30434251-30434585,
30434929-30435075,30435498-30435569
Length = 601
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF +PK+ E FD P AC W
Sbjct: 464 LNFSHPKISENFD--PHACGW 482
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP + + FD P AC W
Sbjct: 443 LNFSNPNIAQNFD--PNACGW 461
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP + FD P+AC W
Sbjct: 594 LNFSNPLIASNFD--PRACGW 612
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP + FD P AC W
Sbjct: 561 LNFSNPHIARNFD--PNACGW 579
>09_06_0055 -
20550889-20551531,20551612-20551889,20552035-20552203,
20552397-20552534,20553945-20553997,20554521-20554574,
20556062-20556295,20556399-20556986,20557065-20557419,
20557494-20557694,20557925-20557998,20558114-20558254,
20558611-20558670,20558750-20558806,20559281-20559318,
20559419-20559578
Length = 1080
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP + FD P AC W
Sbjct: 513 LNFSNPHIARNFD--PNACGW 531
>03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071
Length = 557
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 231 NLSNWGSKSTRQRLHEA--INVRSSTCISSVTTALILTSVIPKLLRSSTWAPRPVI 392
NL +W S+ ++ L ++ +S ++ T ++LT I K+ R + P+P +
Sbjct: 90 NLLSWKSRGSKDLLFRVCIVSAIASALFTNDTCCVVLTEFILKVARQNNLPPQPFL 145
>11_02_0052 + 7788655-7789850,7789921-7790011
Length = 428
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -3
Query: 96 VEQNFEFVQCVTFV-EHFVSRHLDEH 22
++ + ++ CV F EHFV+R++D H
Sbjct: 339 IKNDVDYYSCVCFGNEHFVARYIDRH 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,768
Number of Sequences: 37544
Number of extensions: 329720
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -