Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30060
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 28 1.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 4.3
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 4.3
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 7.5
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 9.9
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 25 9.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.9
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Frame = +1
Query: 547 IQENANVSRPLTLPSVRANAF-----VPIVEARSLYLMGEARTL----EPRPRKVNLKVV 699
I A+V+R LPSV N +P +E + + + L PR K L+VV
Sbjct: 2877 INRFAHVARKHKLPSVCLNQLTKIYTLPNIEIQEAFYKLREQVLCYLQNPRDLKTGLEVV 2936
Query: 700 LGRPVLKRPLKRTTKFLPPRGKFLKAQN 783
++ ++ ++F+ +GKFL+ N
Sbjct: 2937 TNTNLMYFNSRQKSEFVTLKGKFLEKLN 2964
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 104 AQEDRSSNCSSRK--GY----PRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPIQPDAV 265
+Q+ SSN S+R GY P HRY + R+ R + SP P ++V
Sbjct: 790 SQKSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSPEPTNRNSV 849
Query: 266 LSENI 280
S+N+
Sbjct: 850 QSKNV 854
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 81 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 245
P PE ++E K+A++ P K +A ES K +++ + + N YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 275 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT-TQGLDDL 451
NI GV+ + ++ + + L +L EK G I GSE + T+ D+
Sbjct: 357 NIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSSITEKTRDI 407
Query: 452 AQRCAQYKKDGCHFAKW 502
A+ A + K+G +F+ W
Sbjct: 408 AKNVATWLKNGENFSSW 424
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 119 SSNCSSRKGYPRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPIQPDAVLSENISGV 289
+ + SSRK Y R I +Y FA R P+S + P++ AV S + S V
Sbjct: 25 AEDLSSRKTYARPVLIRQYRSLRFANKEENICRLTPNS-AFVPVRDSAVASISTSKV 80
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 350 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 457
L+K+G++P V++ +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +1
Query: 433 PGSGRPRPALRPVQEGRLPLRQVALLLKIGRNTPSYQAIQENANVSRP 576
PG+ RP+ PV + + ++ L + YQ + +N ++ P
Sbjct: 8 PGTPVQRPSAGPVNQAQFSQQRTNQLTSLLHTMTMYQQLAQNVGLNTP 55
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 212 HRGEPSSLSPTPIQPDAVLSENISGVILFHETLYQKADD--GTPLVSLL 352
++ PS+L+P + DA++SEN Y+ D PLV LL
Sbjct: 530 NQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLL 578
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 541 QAIQENANVSRPLTLPSVRANAFVPIVEAR 630
Q Q NAN + LP+ ANA +P+ R
Sbjct: 165 QTYQSNANYTASSPLPTASANAPLPVPPPR 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,590,163
Number of Sequences: 5004
Number of extensions: 79295
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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