Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30038
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 184 6e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 184 6e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 184 6e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 6e-33
SB_54| Best HMM Match : Actin (HMM E-Value=0) 105 4e-23
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 1e-22
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 94 8e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 87 9e-18
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 75 5e-14
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 58 6e-09
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 54 8e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 3e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 35 0.067
SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032) 33 0.21
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.63
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 31 0.63
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21) 30 1.5
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12) 30 1.5
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.5
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 4.4
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 184 bits (448), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNTPAMYVAIQAVLSLYASGRTTGM 509
FN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 139 bits (336), Expect = 2e-33
Identities = 65/71 (91%), Positives = 67/71 (94%)
Frame = +1
Query: 55 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGILTSNTP 267
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 153 VMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERG 198
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 184 bits (448), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 435 FNTPAMYVAIQAVLSLYASGRTTGM 509
FN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 127 FNSPAMYVAIQAVLSLYASGRTTGI 151
Score = 136 bits (329), Expect = 1e-32
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 61 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGILTSNTP 267
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 97.5 bits (232), Expect = 8e-21
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 152 VMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 184 bits (448), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 435 FNTPAMYVAIQAVLSLYASGRTTGM 509
FN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 127 FNSPAMYVAIQAVLSLYASGRTTGI 151
Score = 137 bits (332), Expect = 6e-33
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +1
Query: 61 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGILTSNTP 267
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 97.5 bits (232), Expect = 8e-21
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 152 VMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 184 bits (448), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNTPAMYVAIQAVLSLYASGRTTGM 509
FN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 143 bits (347), Expect = 1e-34
Identities = 66/71 (92%), Positives = 68/71 (95%)
Frame = +1
Query: 55 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGILTSNTP 267
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 97.5 bits (232), Expect = 8e-21
Identities = 44/46 (95%), Positives = 46/46 (100%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 153 VMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 184 bits (448), Expect = 6e-47
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 434
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 435 FNTPAMYVAIQAVLSLYASGRTTGM 509
FN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGI 152
Score = 139 bits (336), Expect = 2e-33
Identities = 63/71 (88%), Positives = 67/71 (94%)
Frame = +1
Query: 55 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 234
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 235 SKRGILTSNTP 267
SKRGILT P
Sbjct: 61 SKRGILTLKYP 71
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/21 (80%), Positives = 19/21 (90%), Gaps = 2/21 (9%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYE--GYA 565
V+DSGDGVSHTVPIYE GY+
Sbjct: 153 VMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 137 bits (332), Expect = 6e-33
Identities = 63/69 (91%), Positives = 66/69 (95%)
Frame = +1
Query: 61 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 240
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 241 RGILTSNTP 267
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 115 VMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRDLTDYLMKILTERG 160
Score = 64.5 bits (150), Expect = 7e-11
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +3
Query: 399 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGM 509
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTG+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGI 114
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTF 326
LKYPIEHGIVTNWDDMEKI TF
Sbjct: 67 LKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 105 bits (251), Expect = 4e-23
Identities = 47/67 (70%), Positives = 57/67 (85%)
Frame = +3
Query: 306 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 485
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 486 ASGRTTG 506
ASGRTTG
Sbjct: 2189 ASGRTTG 2195
Score = 78.2 bits (184), Expect = 6e-15
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERG
Sbjct: 2197 VFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERG 2242
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 79 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 180
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 103 bits (248), Expect = 1e-22
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Frame = +3
Query: 237 QKRYP-DLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREK 410
Q RY ++ YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREK
Sbjct: 63 QLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREK 122
Query: 411 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGM 509
M ++MFE + +Y+AIQAVL+LYA G TG+
Sbjct: 123 MIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGV 155
Score = 71.3 bits (167), Expect = 6e-13
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V+DSGDGV+H P+YEG+ALPH RLD+AGRD+T YL+K++ RG
Sbjct: 156 VIDSGDGVTHICPVYEGFALPHLTRRLDIAGRDITKYLIKLMLLRG 201
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +1
Query: 73 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 246
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 247 ILTSNTP 267
+L N P
Sbjct: 67 MLEVNYP 73
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 94.3 bits (224), Expect = 8e-20
Identities = 42/46 (91%), Positives = 44/46 (95%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
V DSGDGVSH VPIYEGYALPHAILRLDLAGRDLTDYLMK++TERG
Sbjct: 31 VFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDYLMKLMTERG 76
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 420 IMFETFNTPAMYVAIQAVLSLYASGRTTGM 509
IMFE FN+PA+YVAIQAVLSLYASGRTTG+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGV 30
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 87.4 bits (207), Expect = 9e-18
Identities = 36/52 (69%), Positives = 47/52 (90%)
Frame = +3
Query: 354 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGM 509
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGV 177
Score = 71.3 bits (167), Expect = 6e-13
Identities = 29/46 (63%), Positives = 40/46 (86%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 646
VLD+GDGVSH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G
Sbjct: 178 VLDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEG 223
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 74.9 bits (176), Expect = 5e-14
Identities = 30/82 (36%), Positives = 54/82 (65%)
Frame = +3
Query: 264 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 443
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 444 PAMYVAIQAVLSLYASGRTTGM 509
PA ++ +VL+ +A+GR+ G+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGL 84
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGTRSLP 661
V+DSG + VP+++GY L AI+R LAG +T ++ E +P
Sbjct: 85 VIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQCRQMFEETNVEVIP 135
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 64 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 180
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +1
Query: 43 Y*FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-S 213
Y FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 691 YSFKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYK 750
Query: 214 YVGDEAQSKRGILTSN 261
GD A +K G++ N
Sbjct: 751 KYGDAAVAKSGVMHLN 766
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 54.4 bits (125), Expect = 8e-08
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = +2
Query: 509 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 643
V+DSGDGV+H +P+ EGY + I + +AGRD+T ++ ++L ER
Sbjct: 65 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLLRER 109
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 258 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 371
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 509 VLDSGDGVSHTVPI 550
V+DSGDGV+H +P+
Sbjct: 359 VIDSGDGVTHVIPV 372
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = -2
Query: 177 MAGPSDDRGEYGARSIISCETGLAHTGAIVYYQRGNFLV 61
MA +DD GE G+ SI+S ETGLAHTGAI+ Q + +V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 34.7 bits (76), Expect = 0.067
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3
Query: 272 FDGVFEVRIPLLLCASSPTYESFCPMPTITP*WRGLPT 159
+DGV ++++ LLL +SSP + S P+ TP +GL T
Sbjct: 273 YDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_43322| Best HMM Match : Peptidase_S9 (HMM E-Value=0.032)
Length = 216
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 437 QHARHVRRHPSRALAVRVRSYHRYVLDSGDGVSHTVPIYEG 559
QH RHV S ++ S +YV D D + +P YEG
Sbjct: 25 QHERHVGHGKSEGERAQIDSLQKYVRDIFDHIDQIIPKYEG 65
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 255 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 407
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 152 GNTARGASSPAKPALHIPEPLSTT 81
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 152 GNTARGASSPAKPALHIPEPLSTT 81
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 234 EQKRYPDLKY--PIEHGIVTNWDDMEKIWHHTFYNE 335
E K Y L Y P + G + NWD ++IW +TF E
Sbjct: 280 ECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 67 EVAALVVDNGSGMCKAGFAGDDAPRAV 147
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 152 GNTARGASSPAKPALHIPEPLSTT 81
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 505 VCAGLRRRCLPHRTH-LRGIRTPSRHPASGLGRSRPHRLPHEDPHRARYSFT 657
+C+ L + H L+ + PS + L + RP LPH +RA SFT
Sbjct: 666 ICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKKRPFALPHLKTNRAMNSFT 717
>SB_7573| Best HMM Match : Nucleoporin (HMM E-Value=0.21)
Length = 928
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = -3
Query: 263 VFEVRIPLLLCASS-PTYESFC----PMPTITP*WRGLPTIEGNTARGASSPAKPALHIP 99
VF VR+P+L+C SS T+ C IT + L I ++A+ S P++P P
Sbjct: 375 VFPVRLPMLVCVSSVVTHVGVCFQHQCYKCITDCLQRLLAIRQSSAQSPSLPSRPG---P 431
Query: 98 EPLSTTNAAT 69
P NA T
Sbjct: 432 PPTPDPNALT 441
>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
Length = 642
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 505 VCAGLRRRCLPHRTH-LRGIRTPSRHPASGLGRSRPHRLPHEDPHRARYSFT 657
+C+ L + H L+ + PS + L + RP LPH +RA SFT
Sbjct: 584 ICSKLFDEIVSDPNHKLKSLLPPSNVSSHNLRKKRPFALPHLKTNRAMNSFT 635
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 460 PSKPCSRCTRPVVPP 504
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 266 GVFEVRIPLLLCASSPTYESFCPMPTITP*WRGLPTI 156
G +P A+SP Y S P+PT TP PTI
Sbjct: 1210 GALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTI 1246
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 408 KMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGMCWTPATVSPTPYPS 551
K ++I+ E + A+ + QA S Y+S TT M TP+ +SPTP PS
Sbjct: 1109 KTSKILMENYK--AVPKSAQAP-SPYSSS-TTKMTGTPSPMSPTPSPS 1152
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 384 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGMCWT 518
+ PK ++ ++F F P M +A++ + A+G TG+ +T
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGIIFT 218
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 152 GNTARGASSPAKPALHIPEPLSTT 81
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 430 KHSTRPPCTSPSKPCSRCTRPVVPPVC--AGLRRRCLPH-RTHLRGIRTPSRHPASGLGR 600
+ +T PC++ PCS P C G R L H R L R H LG
Sbjct: 35 RSATLAPCSATLAPCSATLAPCSALTCPMLGHTRPTLGHTRPTLGHTRPTLGHTRPMLGH 94
Query: 601 SRPHRLPHEDP 633
+RP L H P
Sbjct: 95 TRP-MLGHTHP 104
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 152 GNTARGASSPAKPALHIPEPLSTT 81
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 492 GRTTGMCWTPATVSPTPYPSTRDTHSLTPSCVW 590
G+TTG + PA+ SP + ++TP W
Sbjct: 853 GQTTGTQFAPASASPAAAAAAAAASAITPQSFW 885
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 192 RHGTERLVRRRRGT---EQKRYPDLKYPIEHGIVTNWDDMEKIWHHTFYNELR 341
++ TE + R R ++KRY +L ++ T+ +D+ K+W Y E R
Sbjct: 55 KYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEER 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,055,880
Number of Sequences: 59808
Number of extensions: 603799
Number of successful extensions: 2357
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 2009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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