Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30027
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 194 2e-50
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 171 9e-44
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 97 2e-21
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 66 5e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 5e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 61 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 6e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 59 8e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 2e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 56 6e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 2e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 51 2e-07
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 51 2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 48 1e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 1e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 1e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 45 1e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 40 5e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 37 0.003
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.1
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 5.1
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.1
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.8
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 6.8
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 26 6.8
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 6.8
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 9.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 9.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 194 bits (472), Expect = 2e-50
Identities = 106/207 (51%), Positives = 142/207 (68%), Gaps = 4/207 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT V
Sbjct: 68 GKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLV 127
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
R+D+ L++GVHVVVGTPGRV+DMI R +PT + +F++ + +SR
Sbjct: 128 RDDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLD--EADEMLSRGFKDQIYD 184
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAYLYRRKSLPWKVLNNF-TCIELEEW 528
QL+ + +L M L+ + + L ++ L + + F +E EEW
Sbjct: 185 IFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEW 244
Query: 529 KLETLCDLYDTLSIAQAVIFCNTRRKV 609
KL+TLCDLY+T+++ QAVIFCNTRRKV
Sbjct: 245 KLDTLCDLYETVTVTQAVIFCNTRRKV 271
Score = 130 bits (313), Expect = 3e-31
Identities = 60/84 (71%), Positives = 74/84 (88%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSATMP DVLEV+ F
Sbjct: 154 RRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKF 213
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
MRDP+RILV+K+ELTLEGIKQFY+
Sbjct: 214 MRDPIRILVKKDELTLEGIKQFYV 237
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE + RDFTVS+MHG
Sbjct: 272 DWLTEQLTERDFTVSSMHG 290
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 171 bits (416), Expect = 9e-44
Identities = 102/208 (49%), Positives = 127/208 (61%), Gaps = 5/208 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V
Sbjct: 70 GKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSV 129
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
DI++L+ G HVV GTPGRV DMI L L + + + + + R
Sbjct: 130 GNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYR 189
Query: 361 F----CQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNN-FTCIELEE 525
+ Q++ S L M K+ I L +R L + L F +E EE
Sbjct: 190 YLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI----LVKRDELTLEGLKQYFIAVEKEE 245
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKV 609
WK +TLCDLYDTL+I QAVIFCN+RRKV
Sbjct: 246 WKFDTLCDLYDTLTITQAVIFCNSRRKV 273
Score = 103 bits (247), Expect = 3e-23
Identities = 43/84 (51%), Positives = 68/84 (80%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV+++SAT+P DVLE++ F
Sbjct: 156 RRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKF 215
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
+PVRILV+++ELTLEG+KQ+++
Sbjct: 216 TTNPVRILVKRDELTLEGLKQYFI 239
Score = 31.9 bits (69), Expect = 0.10
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE M +FTV++MHG
Sbjct: 274 DWLTEKMREANFTVTSMHG 292
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 97.1 bits (231), Expect = 2e-21
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 1/206 (0%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I L+++DT + Q LIL PTRELA Q +V LG H+N K GGT +
Sbjct: 93 GKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTL 152
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI-LVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSS 357
R+DI +L VH+VVGTPGRV D+ V + F+ PE + + S
Sbjct: 153 RDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLS 212
Query: 358 RFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEEWKLE 537
F + S YS L++ ++D Y + L + + + E K+
Sbjct: 213 YFPKNRQISLYSATFPLIVK-NFMDKHLNKPYE-INLMDELTLRGVTQYYAFVDESQKVH 270
Query: 538 TLCDLYDTLSIAQAVIFCNTRRKVGL 615
L L+ L I Q++IFCN+ +V L
Sbjct: 271 CLNTLFSKLQINQSIIFCNSTNRVEL 296
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/72 (36%), Positives = 37/72 (51%)
Frame = +3
Query: 291 FVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 470
FV+DEAD++LS F I + + Q+ L SAT P V + P I +
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM- 248
Query: 471 EELTLEGIKQFY 506
+ELTL G+ Q+Y
Sbjct: 249 DELTLRGVTQYY 260
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 66.1 bits (154), Expect = 5e-12
Identities = 37/85 (43%), Positives = 49/85 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K +GG ++
Sbjct: 56 GKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDM 115
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
L HVVV TPGR+ D+I
Sbjct: 116 IRQSIDLSKRPHVVVATPGRLADLI 140
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKIL--SADVQVILLSATMPDDVLEV 425
IK V+DEAD +LS F D + D F +L S D Q +L +AT+ D + ++
Sbjct: 154 IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.1 bits (154), Expect = 5e-12
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
RR L A IK+FVLDEAD ML + G DQ + +L + Q++L SAT + V + +
Sbjct: 247 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAER 306
Query: 435 FMRDPVRILVQKEELTLEGIKQFYM 509
F + I ++ EEL++EGIKQ YM
Sbjct: 307 FAPNANEIRLKTEELSVEGIKQLYM 331
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G + K +
Sbjct: 165 GKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT-----AFGI 219
Query: 181 REDI-RQLESGVHVVVGTPGRVYDMI 255
++ + + + +V+GTPG V D++
Sbjct: 220 KDSVPKGAKIDAQIVIGTPGTVMDLM 245
Score = 29.9 bits (64), Expect = 0.42
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 520 EEWKLETLCDLYDTLSIAQAVIFCNTR 600
EE K L +LY L+I Q++IFC +
Sbjct: 336 EEHKYNVLVELYGLLTIGQSIIFCKKK 362
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 60.9 bits (141), Expect = 2e-10
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
+ L N++K FVLDE D++L S + I +VF+ QV++ SAT+ +++ + + F
Sbjct: 191 KILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKF 250
Query: 438 MRDPVRILVQKE-ELTLEGIKQFYM 509
M++P+ I V E +LTL G++Q Y+
Sbjct: 251 MQNPLEIYVDDETKLTLHGLQQHYV 275
Score = 55.6 bits (128), Expect = 7e-09
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +S LQQI+ E L+L TRELA QI+ +L + + GG N
Sbjct: 100 GKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGIN 159
Query: 178 VREDI---RQLESGVHVVVGTPGRVYDMI 255
+++D+ + H+VV TPGR+ ++
Sbjct: 160 IKQDMEAFKDKSKSPHIVVATPGRLNALV 188
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/83 (36%), Positives = 48/83 (57%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 95 GKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDM 154
Query: 181 REDIRQLESGVHVVVGTPGRVYD 249
L HV+V TPGR+ D
Sbjct: 155 VTQAVALSKKPHVLVCTPGRLMD 177
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 252 DTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR 431
+ + +K ++DEAD +L F I + KI+ + + +L SATM V ++ R
Sbjct: 180 ENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQR 239
Query: 432 CFMRDPVRILVQKEELTLEGIKQFYM 509
+ PVR+ V + T++ + Q Y+
Sbjct: 240 ASLHQPVRVAVSSKFSTVDTLIQRYL 265
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 58.8 bits (136), Expect = 8e-10
Identities = 28/63 (44%), Positives = 38/63 (60%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A++LAPTRELAQQIQ + L +C + +GG E Q+ G H+VV TPGR+
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLL 387
Query: 247 DMI 255
D +
Sbjct: 388 DCL 390
Score = 32.7 bits (71), Expect = 0.059
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL-------------------SADVQ 380
RR + V+DEAD ML GF+D ++ + L S+ Q
Sbjct: 392 RRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQ 451
Query: 381 VILLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 500
I+ SAT+P V +++ ++ +PV + + ++ ++Q
Sbjct: 452 TIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQ 491
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKT F I IL+ + + QAL++APTRELA QI + + N + + GG
Sbjct: 171 GKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGL 230
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
V++ R L HVVV TPGR++ +I
Sbjct: 231 AVQKQQRLLNKHPHVVVATPGRLWSVI 257
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADV----QVILLSATMPD 410
IK VLDEAD +L + +++ + +IL + Q + SAT +
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDE 315
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.0 bits (129), Expect = 6e-09
Identities = 26/76 (34%), Positives = 46/76 (60%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
I++ V+DEAD ML GF D+++++ + Q +L SATM D V ++ R + PVR+
Sbjct: 406 IEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVF 465
Query: 462 VQKEELTLEGIKQFYM 509
V ++ T + + Q ++
Sbjct: 466 VDNKKTTAKLLTQEFV 481
Score = 54.4 bits (125), Expect = 2e-08
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA F + IL+++ + + LIL PTRELA Q V + + CIGG
Sbjct: 308 GKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGG 367
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYD 249
+++ ++L +V+ TPGR D
Sbjct: 368 LSLKLQEQELRKRPDIVIATPGRFID 393
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F I +++ + +++ +ALIL+P RELA Q KVV + + A +GG
Sbjct: 118 GKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGV 177
Query: 175 NVREDIRQLESGVHVVVGTPGR 240
++ E L +VV TPGR
Sbjct: 178 SLEEQFSLLSGKPDIVVATPGR 199
Score = 47.2 bits (107), Expect = 3e-06
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L ++I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++ ++ ++D
Sbjct: 209 LELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQD 268
Query: 447 PVRILVQKE 473
PV + + E
Sbjct: 269 PVLVRLDVE 277
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.8 bits (116), Expect = 2e-07
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Frame = +1
Query: 1 GKTATFSISILQQI-------DTSIRECQALILAPTRELAQQIQKVVIALGD----HLNA 147
GKT + + I+Q++ T A+I+APTREL QQI V L + H
Sbjct: 190 GKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIV 249
Query: 148 KCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
C+ IGG + + ++ GV++++GTPGR+ D
Sbjct: 250 SCNV-IGGEKKKSEKARIRKGVNILIGTPGRLAD 282
Score = 33.1 bits (72), Expect = 0.045
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 252 DTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPD-DVLEVS 428
+ AL + ++ VLDE D ++ GF++ + + L + +I ++P V +
Sbjct: 285 ENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLC 344
Query: 429 RCFMRDPVRIL 461
M+D V+ L
Sbjct: 345 SATMKDTVKRL 355
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = +3
Query: 252 DTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK---ILSADV-QVILLSATMPDDVL 419
D R AN IK VLDEAD ML GF+ QI + + + S + Q ++ SAT P D+
Sbjct: 321 DRGRISLAN-IKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQ 379
Query: 420 EVSRCFMRDPVRILVQKEELTLEGIKQFYMH 512
++R F++D V + V + T E I Q +H
Sbjct: 380 LLARDFLKDYVFLSVGRVGSTSENITQKVVH 410
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
LILAPTREL QI + + A GG ++R IRQ++ G ++ TPGR+ D
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVD 318
Query: 250 MI 255
+I
Sbjct: 319 LI 320
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V ++R ++ D +++
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVT 329
Query: 462 VQKEELTL-EGIKQ 500
V +L IKQ
Sbjct: 330 VGSLDLAASHNIKQ 343
Score = 49.6 bits (113), Expect = 5e-07
Identities = 26/62 (41%), Positives = 33/62 (53%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+LAPTRELA QIQ+ G + GG IR L GV + + TPGR+ D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 250 MI 255
M+
Sbjct: 259 ML 260
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A+I+ PTRELA QI + LN + GG +++ I L+ G +VV TPGR+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 247 DMI 255
D++
Sbjct: 554 DVL 556
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/95 (27%), Positives = 43/95 (45%)
Frame = +3
Query: 216 CGGGHSRSCI*YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLS 395
C G + + R + + VLDEAD M GF+ Q+ + + D Q +L S
Sbjct: 547 CTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFS 606
Query: 396 ATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 500
AT P + ++R ++ PV I V + ++Q
Sbjct: 607 ATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQ 641
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 264 ALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----ILSADVQVILLSATMPDDVLEVS 428
++ + + VLDEAD ML GF+ I ++ + Q + SAT P+ V ++
Sbjct: 304 SIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALA 363
Query: 429 RCFMRDPVRILVQKEEL 479
F++DPV+I + +EL
Sbjct: 364 ATFLKDPVKITIGSDEL 380
Score = 46.4 bits (105), Expect = 4e-06
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 GKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKT F I LQ ++ + + L+++PTRELA Q + + +L N K GG
Sbjct: 214 GKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGG 273
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYDMI 255
E R ++ V++GTPGR+ D+I
Sbjct: 274 APKSEQARAAKN-ASVIIGTPGRLLDLI 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 48.0 bits (109), Expect = 1e-06
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQI-HDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++ DP+RI
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRI 249
Query: 459 LVQKEELTLEGIKQ 500
+V ++ + I Q
Sbjct: 250 IVGLKDAATDSIDQ 263
Score = 36.3 bits (80), Expect = 0.005
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAK-CHACIGGT 174
GKT + ILQ++ + +A+I+APTREL +QI + L + K
Sbjct: 95 GKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNE 154
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
++E +L + +GTP R+ I
Sbjct: 155 KIQEKAPKLREKYDMCIGTPMRLVQAI 181
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 GKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G + IG
Sbjct: 88 GKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIG 147
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYDMI 255
G N +E+ +L S ++++V TPGR+ I
Sbjct: 148 GNNYKEEKERL-SRMNILVCTPGRLLQHI 175
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+++ +LDEAD +L GF+ + + L Q +L SAT V +++R +++P I
Sbjct: 186 LQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFIS 245
Query: 462 VQKEEL--TLEGIKQFYM 509
V + + T + QFY+
Sbjct: 246 VHENDTSSTPSNLNQFYL 263
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 3e-06
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKIL-SADVQVILLSATMPDDVLEVSRCFMR-DPVR 455
++ V+DEAD +L GF+D++ + KIL S + Q +L SAT V +++R ++ P+
Sbjct: 237 LRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARISLKPGPLY 296
Query: 456 ILVQ--KEELTLEGIKQFYM 509
+ V K T+EG++Q Y+
Sbjct: 297 VNVDSGKPTSTVEGLEQGYV 316
Score = 46.0 bits (104), Expect = 6e-06
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Frame = +1
Query: 1 GKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F +I +L + R +I++PTRELA QI V L + + IG
Sbjct: 138 GKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIG 197
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYD 249
G N R + +L GV+++V TPGR+ D
Sbjct: 198 GANRRAEADKLVKGVNLLVATPGRLLD 224
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/79 (27%), Positives = 42/79 (53%)
Frame = +3
Query: 240 CI*YDTRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVL 419
C+ + L + +K V+DEAD MLS G+ + + + + L Q L+SAT+ ++
Sbjct: 151 CVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIA 210
Query: 420 EVSRCFMRDPVRILVQKEE 476
+ + R+P + V+ +E
Sbjct: 211 SLQKLVCRNPFILAVKDKE 229
Score = 40.3 bits (90), Expect = 3e-04
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = +1
Query: 1 GKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ L +
Sbjct: 63 GKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFI 122
Query: 163 IGGTNVREDIRQ--LESGVHVVVGTPGR 240
TN + +++ L +V+ TP R
Sbjct: 123 NVATNSSDTVQRPLLLDLPDIVIATPSR 150
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 177
GKT ++ I I+Q + ++ + +++ PTREL Q+ K + A G +
Sbjct: 185 GKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKS 244
Query: 178 VREDIRQL-----ESGVHVVVGTPGRVYDMI 255
+R + QL E + V+V TPGR+ D I
Sbjct: 245 LRHETYQLNGDENECRIDVLVSTPGRLVDHI 275
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILS 368
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 303 EADEMLSRGFKDQIHDVFKI-LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 479
+ D+ +S F I + L + +Q ++ SAT+ D +++ + +P +LVQ +++
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 480 TLE 488
++
Sbjct: 387 EVD 389
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVREDIRQLESGVHVVVGTPGRV 243
++IL+PTRELA QI + L + IGG + +RE+ ++++ TPGR+
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Query: 244 YDMILVVRFMPTPSNFLFLM 303
D + R + + S F++
Sbjct: 175 EDHLQNPRILESLSTDSFIL 194
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-ILSADVQVILLSATMPDDVLEVSRCF 437
R L + + F+LDEAD ++ GF + I ++ + + + + + SATMP V V R
Sbjct: 182 RILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGI 241
Query: 438 MRDPVRI---LVQKEELTLEGIKQF 503
+ ++ L E T E + QF
Sbjct: 242 LGTDFKLINCLDPNEPPTHERVPQF 266
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 37.1 bits (82), Expect = 0.003
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAL----------GDHL 141
GKT + + ++ DT ALI+APTRELA QI V L G L
Sbjct: 50 GKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKL 109
Query: 142 NAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
A + GT + E VV+GTPGR+ +M+
Sbjct: 110 VADMYIGGKGTLTNDLASFREKNPSVVIGTPGRLNEML 147
Score = 34.7 bits (76), Expect = 0.015
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSR-CFMRDPVRI 458
+++ +LDEAD ++ GF+ + + L + L SATM D V + +R+ VR+
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRV 214
Query: 459 LV 464
V
Sbjct: 215 SV 216
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 27 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 128
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 309 DEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVL 419
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 141 QVITKSYHHLLNLLGQLSCGSQDQ 70
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 328 VSRTRSMMSSRFCQLMFKSYYSLLPCLMMYW 420
V++T S+ + F L S++ L+ CL YW
Sbjct: 78 VNKTTSIALALFKTLAVISFFLLIGCLFAYW 108
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 249 YDTRRALHANTIKLFVLDEADEM 317
+ + R + A+T K+ +LDEAD M
Sbjct: 110 FASTRQIFASTFKMIILDEADAM 132
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 195 PTGEWCSCGGGHSRSCI*YDTRRALHANTIKLFVLDEADEMLSRGFKD 338
P EW S H R+CI + ++ L + I V+D DE KD
Sbjct: 1599 PVSEWVSKLDTHVRNCIKFSHKQNLEEDFIHEPVID-VDEFAISSSKD 1645
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 106 IQKVVIALGDHLNAKCHACIGGTNVRED 189
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 73 ILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 231
+LAP REL +++ + + + D+ ++C R + L +++++ T
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDT 81
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -1
Query: 201 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 100
+L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 1 GKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 111
G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 91 GSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 282 WCWHEAHDEYHIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSI 142
W H AHDEY + + + H + LA A AS + I
Sbjct: 257 WGLHAAHDEYRLDFKEFVTLHLVRPFAMLATPIVFFIAMFASYVYGI 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,169
Number of Sequences: 5004
Number of extensions: 75267
Number of successful extensions: 291
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -