Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30027
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 166 1e-41
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 165 3e-41
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 163 1e-40
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 156 1e-38
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 111 5e-25
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 89 4e-18
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 89 4e-18
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 82 3e-16
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 82 3e-16
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 77 1e-14
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 64 1e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 5e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 61 9e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 61 9e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 1e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 60 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 60 2e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 6e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 6e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 57 1e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 57 1e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 57 1e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 2e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 56 3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 3e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 56 3e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 3e-08
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 56 3e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 56 3e-08
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 55 5e-08
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 55 5e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 55 5e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 55 5e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 54 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 2e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 53 2e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 6e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 51 7e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 51 1e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 51 1e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 50 2e-06
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 50 2e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 50 2e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 49 4e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 5e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 48 5e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 47 2e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 46 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 4e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 4e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 6e-05
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 45 6e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 42 3e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 42 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 36 0.022
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.030
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.030
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 30 1.5
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.6
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 29 4.5
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu... 28 5.9
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 7.8
At3g47150.1 68416.m05119 F-box family protein various predicted ... 28 7.8
At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote... 28 7.8
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH... 28 7.8
At2g15490.2 68415.m01773 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.8
At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transfera... 28 7.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 166 bits (404), Expect = 1e-41
Identities = 97/207 (46%), Positives = 131/207 (63%), Gaps = 4/207 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+V
Sbjct: 88 GKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSV 147
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
RED R L++GVHVVVGTPGRV+DM+ + ++ + + L + +SR
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDML---KRQSLRADNIKMFVLDEADEMLSRGFKDQIYD 204
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAYLYRRKSLPWKVLNNF-TCIELEEW 528
QL+ + M + L+ + + L +R L + + F +E EEW
Sbjct: 205 IFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEW 264
Query: 529 KLETLCDLYDTLSIAQAVIFCNTRRKV 609
KLETLCDLY+TL+I Q+VIF NTRRKV
Sbjct: 265 KLETLCDLYETLAITQSVIFVNTRRKV 291
Score = 120 bits (288), Expect = 1e-27
Identities = 55/85 (64%), Positives = 73/85 (85%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R F
Sbjct: 174 RQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
M PVRILV+++ELTLEGIKQFY++
Sbjct: 234 MSKPVRILVKRDELTLEGIKQFYVN 258
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 512 LN*KNGSWKLCVTCMIH---CLLHKL*FSATPVARWDWLTESMHLRDFTVSAMHG 667
+N + WKL C ++ + + F T + DWLT+ M RD TVSA HG
Sbjct: 257 VNVEKEEWKLETLCDLYETLAITQSVIFVNTR-RKVDWLTDKMRSRDHTVSATHG 310
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 165 bits (401), Expect = 3e-41
Identities = 96/207 (46%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+V
Sbjct: 90 GKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSV 149
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
RED R L+SGVHVVVGTPGRV+D++ R ++ + + L + +SR
Sbjct: 150 REDQRVLQSGVHVVVGTPGRVFDLL---RRQSLRADAIKMFVLDEADEMLSRGFKDQIYD 206
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAYLYRRKSLPWKVLNNF-TCIELEEW 528
QL+ + M + L+ + + L +R L + + F ++ EEW
Sbjct: 207 IFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEW 266
Query: 529 KLETLCDLYDTLSIAQAVIFCNTRRKV 609
KLETLCDLY+TL+I Q+VIF NTRRKV
Sbjct: 267 KLETLCDLYETLAITQSVIFVNTRRKV 293
Score = 121 bits (292), Expect = 5e-28
Identities = 56/85 (65%), Positives = 74/85 (87%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L A+ IK+FVLDEADEMLSRGFKDQI+D+F++L + VQV + SATMP + LE++R F
Sbjct: 176 RQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKF 235
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
M PVRILV+++ELTLEGIKQFY++
Sbjct: 236 MNKPVRILVKRDELTLEGIKQFYVN 260
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLT+ M RD TVSA HG
Sbjct: 294 DWLTDKMRSRDHTVSATHG 312
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 163 bits (396), Expect = 1e-40
Identities = 95/207 (45%), Positives = 129/207 (62%), Gaps = 4/207 (1%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+V
Sbjct: 88 GKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
RED R L++GVHVVVGTPGRV+DM+ P + + + L + +SR
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFDMLRRQSLRP---DCIKMFVLDEADEMLSRGFKDQIYD 204
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL---YAYLYRRKSLPWKVLNNF-TCIELEEW 528
QL+ + M + L+ + + L +R L + + F +E E+W
Sbjct: 205 IFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDW 264
Query: 529 KLETLCDLYDTLSIAQAVIFCNTRRKV 609
KLETLCDLY+TL+I Q+VIF NTRRKV
Sbjct: 265 KLETLCDLYETLAITQSVIFVNTRRKV 291
Score = 117 bits (282), Expect = 7e-27
Identities = 54/85 (63%), Positives = 72/85 (84%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R++L + IK+FVLDEADEMLSRGFKDQI+D+F++L +QV + SATMP + LE++R F
Sbjct: 174 RQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH 512
M PVRILV+++ELTLEGIKQFY++
Sbjct: 234 MSKPVRILVKRDELTLEGIKQFYVN 258
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 512 LN*KNGSWKLCVTCMIH---CLLHKL*FSATPVARWDWLTESMHLRDFTVSAMHG 667
+N + WKL C ++ + + F T + DWLT+ M RD TVSA HG
Sbjct: 257 VNVEKEDWKLETLCDLYETLAITQSVIFVNTR-RKVDWLTDKMRSRDHTVSATHG 310
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 156 bits (379), Expect = 1e-38
Identities = 97/214 (45%), Positives = 125/214 (58%), Gaps = 11/214 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A+G H N + HACIGG +V
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSV 143
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
EDIR+LE GVHVV GTPGRV DMI R + T + L ++ + M+S
Sbjct: 144 GEDIRKLEHGVHVVSGTPGRVCDMI-KRRSLRTRAIKLLIL---------DESDEMLSRG 193
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EIL----------YAYLYRRKSLPWKVLNN-FT 507
F ++ Y L P L + EIL L +R L + + F
Sbjct: 194 FKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFV 253
Query: 508 CIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
+E EEWK +TLCDLYDTL+I QAVIFCNT+RKV
Sbjct: 254 AVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKV 287
Score = 115 bits (277), Expect = 3e-26
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
RR+L IKL +LDE+DEMLSRGFKDQI+DV++ L D+QV L+SAT+P ++LE++ F
Sbjct: 170 RRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKF 229
Query: 438 MRDPVRILVQKEELTLEGIKQFYMH*IRRMEAGNSV*PV*YTVYCTS----CNFLQHPSQ 605
M +PV+ILV+++ELTLEGIKQF++ + +++ + T+ T CN +
Sbjct: 230 MTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDY 289
Query: 606 GGIGSLNLCICVTLLYLLCMGDMDQREPEVIMKAVSYWLLLVS*FTTDLWARG 764
+ V+ ++ GDM Q+E + IM V TTD+WARG
Sbjct: 290 LSEKMRSHNFTVSSMH----GDMPQKERDAIMNEFRSGDSRVL-ITTDVWARG 337
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
D+L+E M +FTVS+MHG
Sbjct: 288 DYLSEKMRSHNFTVSSMHG 306
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 111 bits (267), Expect = 5e-25
Identities = 50/84 (59%), Positives = 68/84 (80%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R +L +KL VLDE+DEMLS+G KDQI+DV++ L D+QV L+SAT+P ++LE++ F
Sbjct: 157 RGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKF 216
Query: 438 MRDPVRILVQKEELTLEGIKQFYM 509
M DPVRILV+ +ELTLEGIKQ+Y+
Sbjct: 217 MTDPVRILVKPDELTLEGIKQYYV 240
Score = 106 bits (255), Expect = 1e-23
Identities = 47/85 (55%), Positives = 64/85 (75%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A+G H N + HACIGG ++
Sbjct: 71 GKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSI 130
Query: 181 REDIRQLESGVHVVVGTPGRVYDMI 255
EDI++LE GVH V GTPGRVYDMI
Sbjct: 131 GEDIKKLERGVHAVSGTPGRVYDMI 155
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +1
Query: 511 IELEEWKLETLCDLYDTLSIAQAVIFCNTRRKV 609
++ EEWK +TLCDLY L+I QA+IFCNTR+KV
Sbjct: 242 VDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKV 274
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 611 DWLTESMHLRDFTVSAMHG 667
DWLTE M +F VS+MHG
Sbjct: 275 DWLTEKMRSSNFIVSSMHG 293
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 88.6 bits (210), Expect = 4e-18
Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT++
Sbjct: 180 GKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCC-----PEVSRTRS 345
++DI +L VH++VGTPGR+ D+ + + L + + K P V S
Sbjct: 240 KDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+ LMF + + P + +K D Y + L K + F E
Sbjct: 300 FLPESRQILMFSATF---PVTVKDFK--DRFLTNPYV-INLMDELTLKGITQFYAFVEER 353
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
K+ L L+ L I Q++IFCN+ +V L
Sbjct: 354 QKIHCLNTLFSKLQINQSIIFCNSVNRVEL 383
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V+DEAD++LS+ F+ + + L Q+++ SAT P V + F+ +P ++
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINL 334
Query: 468 KEELTLEGIKQFY 506
+ELTL+GI QFY
Sbjct: 335 MDELTLKGITQFY 347
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 88.6 bits (210), Expect = 4e-18
Identities = 67/210 (31%), Positives = 100/210 (47%), Gaps = 5/210 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F I +L++ID QA+I+ PTRELA Q +V LG HL + GGT++
Sbjct: 180 GKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL 239
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCC-----PEVSRTRS 345
++DI +L VH++VGTPGR+ D+ + + L + + K P V S
Sbjct: 240 KDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+ LMF + + P + +K D Y + L K + F E
Sbjct: 300 FLPESRQILMFSATF---PVTVKDFK--DRFLTNPYV-INLMDELTLKGITQFYAFVEER 353
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
K+ L L+ L I Q++IFCN+ +V L
Sbjct: 354 QKIHCLNTLFSKLQINQSIIFCNSVNRVEL 383
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V+DEAD++LS+ F+ + + L Q+++ SAT P V + F+ +P ++
Sbjct: 276 VLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINL 334
Query: 468 KEELTLEGIKQFY 506
+ELTL+GI QFY
Sbjct: 335 MDELTLKGITQFY 347
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 82.2 bits (194), Expect = 3e-16
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT++
Sbjct: 173 GKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSL 232
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
R+DI +L VH++VGTPGR+ D+ T + L C V + S
Sbjct: 233 RDDIMRLHQPVHLLVGTPGRILDL--------TKKG---VCVLKDCAMLVMDEADKLLSA 281
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKV--LNNFTCIELEEW-- 528
Q + LP + + + A+ R P+ + ++ T + + ++
Sbjct: 282 EFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYA 341
Query: 529 ------KLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
K+ L L+ L I Q++IFCN+ +V L
Sbjct: 342 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL 376
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P V +R P ++
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY-VINL 327
Query: 468 KEELTLEGIKQFY 506
++LTL G+ Q+Y
Sbjct: 328 MDQLTLMGVTQYY 340
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 82.2 bits (194), Expect = 3e-16
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F I +L++ID + QA+IL PTRELA Q +V L +LN + GGT++
Sbjct: 173 GKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSL 232
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSSR 360
R+DI +L VH++VGTPGR+ D+ T + L C V + S
Sbjct: 233 RDDIMRLHQPVHLLVGTPGRILDL--------TKKG---VCVLKDCAMLVMDEADKLLSA 281
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKV--LNNFTCIELEEW-- 528
Q + LP + + + A+ R P+ + ++ T + + ++
Sbjct: 282 EFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYA 341
Query: 529 ------KLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
K+ L L+ L I Q++IFCN+ +V L
Sbjct: 342 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVEL 376
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V+DEAD++LS F+ + ++ + L + Q ++ SAT P V +R P ++
Sbjct: 269 MLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY-VINL 327
Query: 468 KEELTLEGIKQFY 506
++LTL G+ Q+Y
Sbjct: 328 MDQLTLMGVTQYY 340
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 77.4 bits (182), Expect = 1e-14
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKT F I L++ID QA+IL PTRELA Q +V L +L + GGT++
Sbjct: 203 GKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSL 262
Query: 181 REDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCC-----PEVSRTRS 345
R+DI +L VH++VGTPGR+ D+ + L + + K P +
Sbjct: 263 RDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQ 322
Query: 346 MMSSRFCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKVLNNFTCIELEE 525
+ LMF + + P + +K D + Y + V + +E E
Sbjct: 323 FLPESRQILMFSATF---PVTVKSFK--DRYLKKPYIINLMDQLTLMGVTQYYAFVE-ER 376
Query: 526 WKLETLCDLYDTLSIAQAVIFCNTRRKVGL 615
K+ L L+ L I Q++IFCN+ +V L
Sbjct: 377 QKVHCLNTLFSKLQINQSIIFCNSVNRVEL 406
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +3
Query: 288 LFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQ 467
+ V+DEAD++LS F+ I ++ + L Q+++ SAT P V +++ P I+
Sbjct: 299 MLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPY-IINL 357
Query: 468 KEELTLEGIKQFY 506
++LTL G+ Q+Y
Sbjct: 358 MDQLTLMGVTQYY 370
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 180
GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C +GG ++
Sbjct: 107 GKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDM 166
Query: 181 REDIRQLESGVHVVVGTPGRV 243
L S H+V+ TPGR+
Sbjct: 167 LTQTMSLVSRPHIVITTPGRI 187
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 285 KLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDV 416
K VLDEAD +L GF+D++ +F+ L Q +L SATM ++
Sbjct: 205 KFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNL 248
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 61.7 bits (143), Expect = 5e-10
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 153 GKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--L 210
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT + + +RQL+ GV V VGTPGRV D++
Sbjct: 211 YGGTPIGQQMRQLDYGVDVAVGTPGRVIDLM 241
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/67 (31%), Positives = 41/67 (61%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R AL+ + ++ VLDEAD+ML GF + + + + L Q ++ SATMP + +++ +
Sbjct: 243 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKY 302
Query: 438 MRDPVRI 458
+ +P+ +
Sbjct: 303 LNNPLTV 309
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 178 VR--EDIRQLESGVHVVVGTPGRV 243
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L ++ F+LDE D+ML S + + ++FK+ D QV++ SAT+ ++ V + FM+
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ 245
Query: 444 DPVRILVQKE-ELTLEGIKQFYM 509
DP+ I V E +LTL G+ Q Y+
Sbjct: 246 DPMEIYVDDEAKLTLHGLVQHYI 268
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 12 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 71
Query: 178 VR--EDIRQLESGVHVVVGTPGRV 243
++ +D+ + E H+VVGTPGRV
Sbjct: 72 IKIHKDLLKNEC-PHIVVGTPGRV 94
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L ++ F+LDE D+ML S + + ++FK+ D QV++ SAT+ ++ V + FM+
Sbjct: 103 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ 162
Query: 444 DPVRILVQKE-ELTLEGIKQFYM 509
DP+ I V E +LTL G+ Q Y+
Sbjct: 163 DPMEIYVDDEAKLTLHGLVQHYI 185
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 60.9 bits (141), Expect = 9e-10
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTN 177
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG N
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVN 154
Query: 178 VR--EDIRQLESGVHVVVGTPGRV 243
++ +D+ + E H+VVGTPGRV
Sbjct: 155 IKIHKDLLKNEC-PHIVVGTPGRV 177
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEML-SRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
L ++ F+LDE D+ML S + + ++FK+ D QV++ SAT+ ++ V + FM+
Sbjct: 186 LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ 245
Query: 444 DPVRILVQKE-ELTLEGIKQFYM 509
DP+ I V E +LTL G+ Q Y+
Sbjct: 246 DPMEIYVDDEAKLTLHGLVQHYI 268
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 GKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 171
GKTA F++ L+++ + + LIL PTRELA QI ++ L + KC +GG
Sbjct: 216 GKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGG 275
Query: 172 TNVREDIRQLESGVHVVVGTPGRVYD 249
+VRE L S +VV TPGR+ D
Sbjct: 276 LSVREQEVVLRSMPDIVVATPGRMID 301
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ + +LDEAD +L GF +I ++ ++ Q +L SATM ++V E+ + + P+R+
Sbjct: 314 LAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLS 373
Query: 462 VQKEELTLEGIKQFYMH*IRRMEAGN 539
G+ + + IRR N
Sbjct: 374 ADPSARRPPGLTEEVVR-IRRTREAN 398
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 GKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F I I+ +I + Q L+LAPTRELA+Q++K L+ C
Sbjct: 165 GKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC--L 222
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GGT + + +R+L G+ V VGTPGR+ D++
Sbjct: 223 YGGTPIGQQMRELNYGIDVAVGTPGRIIDLM 253
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/67 (34%), Positives = 42/67 (62%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
R AL+ + ++ VLDEAD+ML GF + + + + L A Q ++ SATMP + +++ +
Sbjct: 255 RGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKY 314
Query: 438 MRDPVRI 458
+ +P+ I
Sbjct: 315 LNNPLTI 321
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
GKTA F I +L+++ + + +ALIL+PTR+LA+Q K LG + + +GG
Sbjct: 77 GKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGD 136
Query: 175 NVREDIRQLESGVHVVVGTPGRVYDMI 255
++ + +L G V++ TPGR+ ++
Sbjct: 137 SMEDQFEELTKGPDVIIATPGRLMHLL 163
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +3
Query: 279 TIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
T++ V DEAD + GF +Q+H + LS + Q +L SAT+P + E ++ +R+P +
Sbjct: 173 TVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLV 232
Query: 459 LVQKEELTLEGIKQFYM 509
+ E +K ++
Sbjct: 233 RLDVENKISPDLKLSFL 249
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 58.0 bits (134), Expect = 6e-09
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA+F + I+ + T R A++LAPTREL Q++ LG L K
Sbjct: 159 GKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTA 218
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG + + +++ GV +++GTPGRV D++
Sbjct: 219 LVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLL 251
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V
Sbjct: 252 SKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGS 310
Query: 435 FMRDPVRILV 464
++ + + +
Sbjct: 311 LAKEIILVSI 320
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 58.0 bits (134), Expect = 6e-09
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA+F + I+ + T R A++LAPTREL Q++ LG L K
Sbjct: 22 GKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTA 81
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+GG + + +++ GV +++GTPGRV D++
Sbjct: 82 LVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLL 114
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/70 (35%), Positives = 42/70 (60%)
Frame = +3
Query: 255 TRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRC 434
++ + + I FVLDE D ML RGF+DQ+ +F+ LS QV+L SAT+ +V +V
Sbjct: 115 SKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGGS 173
Query: 435 FMRDPVRILV 464
++ + + +
Sbjct: 174 LAKEIILVSI 183
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 250 MILVVRFMPTPSNFLFL 300
++ + R ++L L
Sbjct: 294 ILEMRRISLRQISYLVL 310
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ +
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Query: 441 RDPVRI 458
+P ++
Sbjct: 358 VNPAQV 363
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 250 MILVVRFMPTPSNFLFL 300
++ + R ++L L
Sbjct: 294 ILEMRRISLRQISYLVL 310
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ +
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Query: 441 RDPVRI 458
+P ++
Sbjct: 358 VNPAQV 363
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QIQ+ + G C GG +R LE G +VV TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 250 MILVVRFMPTPSNFLFL 300
++ + R ++L L
Sbjct: 294 ILEMRRISLRQISYLVL 310
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R + I VLDEAD ML GF+ QI + K + Q ++ +AT P V +++ +
Sbjct: 298 RRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Query: 441 RDPVRI 458
+P ++
Sbjct: 358 VNPAQV 363
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A+IL+PTRELA QI K GGT + + +R+LE GV ++V TPGR+
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLN 299
Query: 247 DMILVVRFMPTPSNFLFL 300
D++ R FL L
Sbjct: 300 DLLERARVSMQMIRFLAL 317
Score = 38.7 bits (86), Expect = 0.004
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 16/185 (8%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADV----QVILLSATMPDDVLEV 425
R + I+ LDEAD ML GF+ QI + + + Q +L SAT P ++ +
Sbjct: 304 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRL 363
Query: 426 SRCFMRDPV-----------RILVQKEELTLEGIKQFYMH*IRRMEAGNSV*PV*YTVYC 572
+ F+ + + ++VQ+ E L+ K+ ++ + + N +
Sbjct: 364 AADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGI----QGKQA 419
Query: 573 TSCNFLQHPSQGGIGSLNLCICVTLLYLLCM-GDMDQREPEVIMKAVSYWLLLVS*FTTD 749
+ F++ ++ G SL +C+ + GD Q+E EV +KA + TD
Sbjct: 420 LTLVFVE--TKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPIL-VATD 476
Query: 750 LWARG 764
+ ARG
Sbjct: 477 VAARG 481
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QIQ + G C GG ++++E GV +VV TPGR+ D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 250 MILVVRFMPTPSNFLFL 300
++ + R ++L L
Sbjct: 365 ILEMKRISLHQVSYLVL 381
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+ + + + VLDEAD ML GF+ QI + + Q ++ +AT P +V +++ +
Sbjct: 369 KRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLL 428
Query: 441 RDPVRI 458
+P ++
Sbjct: 429 VNPAQV 434
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQKVVIALGDHLNAKCH 156
GKTA F + +L I + E + A+++APTRELAQQI++ + +L +
Sbjct: 362 GKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVT 421
Query: 157 ACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
+ +GG ++ E ++ G +V+ TPGR+ D +
Sbjct: 422 SIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL 454
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 17/98 (17%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL-SADVQ----------------VI 386
RR N VLDEAD M+ GF+ Q+ V + S++++
Sbjct: 456 RRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTY 515
Query: 387 LLSATMPDDVLEVSRCFMRDPVRILVQKEELTLEGIKQ 500
+ SATMP V ++R ++R+PV + + T + I Q
Sbjct: 516 MFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQ 553
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+LAPTRELA QIQ+ G K GG +R L+ GV +V+ TPGR+ D
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 250 MI 255
M+
Sbjct: 236 MM 237
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ VLDEAD ML GF QI + + D Q + SAT P +V ++S+ F+ +P +++
Sbjct: 247 VTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVI 306
Query: 462 VQKEEL 479
+ +L
Sbjct: 307 IGSSDL 312
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/63 (44%), Positives = 37/63 (58%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A+IL+PTRELA QI K GGT V + IR+LE GV ++V TPGR+
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLN 286
Query: 247 DMI 255
D++
Sbjct: 287 DLL 289
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADV----QVILLSATMPDDVLEVSRCFMRDP 449
++ LDEAD ML GF+ QI + + + Q +L SAT P ++ ++ F+ +
Sbjct: 299 VRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNY 358
Query: 450 VRILV 464
+ + V
Sbjct: 359 IFLAV 363
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
LILAPTRELA QIQ + G C GG +++LE G +VV TPGR+ D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 250 MI 255
++
Sbjct: 571 IL 572
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ L VLDEAD ML GF+ QI + + Q ++ +AT P +V +++ + +PV++
Sbjct: 582 VSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVN 641
Query: 462 VQK-EELTLEGIKQFYMH*IRRME 530
+ + +EL Y+ + +ME
Sbjct: 642 IGRVDELAANKAITQYVEVVPQME 665
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT F + +L+ I D E L++APTREL QQI + L +C
Sbjct: 578 GKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVY 637
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG+ V + I +L+ G +VV TPGR+ D++
Sbjct: 638 GGSGVAQQISELKRGTEIVVCTPGRMIDIL 667
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/73 (32%), Positives = 37/73 (50%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ V+DEAD M GF+ QI + + + + Q +L SAT P V ++R + PV I
Sbjct: 680 VTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQ 739
Query: 462 VQKEELTLEGIKQ 500
V + + I Q
Sbjct: 740 VGGRSVVNKDITQ 752
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 DTRRALHANT--IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEV 425
D H N + VLDEAD ML GF+ QI + + D Q +L SAT P +V +
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 360
Query: 426 SRCFMRDPVRILVQKEEL 479
+R F+RDP + ++ +L
Sbjct: 361 ARQFLRDPYKAIIGSTDL 378
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 214 GKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIY 273
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG IR L GV +V+ TPGR+ DM+
Sbjct: 274 GGAPKGPQIRDLRRGVEIVIATPGRLIDML 303
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 252 DTRRALHANT--IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEV 425
D H N + VLDEAD ML GF+ QI + + D Q +L SAT P +V +
Sbjct: 301 DMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 360
Query: 426 SRCFMRDPVRILVQKEEL 479
+R F+RDP + ++ +L
Sbjct: 361 ARQFLRDPYKAIIGSTDL 378
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT + + L + R Q LILAPTRELA QIQ+ G +
Sbjct: 214 GKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIY 273
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG IR L GV +V+ TPGR+ DM+
Sbjct: 274 GGAPKGPQIRDLRRGVEIVIATPGRLIDML 303
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 55.2 bits (127), Expect = 5e-08
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Frame = +1
Query: 1 GKTATFSISILQQID------TSIREC----QALILAPTRELAQQIQKVVIALGDHLNAK 150
GKT F I I++++ T+ R + L+LAPTRELA+Q++K + +L+
Sbjct: 151 GKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTV 210
Query: 151 CHACIGGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
C GG + L GV VVVGTPGR+ D+I
Sbjct: 211 C--VYGGVSYTIQQSALTRGVDVVVGTPGRIIDLI 243
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
R+L ++ VLDEAD+ML+ GF++ + + + L Q +L SATMP V +++R ++
Sbjct: 246 RSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYL 305
Query: 441 RDPVRI-LV-QKEELTLEGIKQF 503
+P+ I LV ++E EGIK +
Sbjct: 306 DNPLNIDLVGDQDEKLAEGIKLY 328
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
L+L+PTRELA QI V+ G+ K GG++ I + SGV +V+GTPGR+ D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 250 MI 255
+I
Sbjct: 255 LI 256
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM-R 443
L + + VLDEAD ML GF++ + + + Q+++ SAT P DV ++++ FM
Sbjct: 261 LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDP 320
Query: 444 DPVRILVQKEEL 479
+P+++++ +L
Sbjct: 321 NPIKVIIGSVDL 332
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFM 440
+AL VLDEAD M GF+ Q+ + + D Q +L SATMP V +++R +
Sbjct: 369 KALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREIL 428
Query: 441 RDPVRILVQKEELTLEGIKQ 500
DP+R+ V + + E I Q
Sbjct: 429 SDPIRVTVGEVGMANEDITQ 448
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = +1
Query: 1 GKTATFSISILQQI--DTSIRECQA---LILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKTA F + ++ I ++ + +I APTRELA QI + A
Sbjct: 277 GKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVY 336
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFMPTPSNFLFL 300
GG + E ++L++G +VV TPGR+ DM+ + +++L L
Sbjct: 337 GGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVL 381
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQQIQKVVIALGDHLN 144
GKT F+I ILQ + + + + A +L+PTRELA QI + ALG ++
Sbjct: 58 GKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS 117
Query: 145 AKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
+C +GG + + L HV+V TPGR++D
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWD 152
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/76 (31%), Positives = 45/76 (59%)
Frame = +3
Query: 279 TIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRI 458
++K VLDEAD +L+ F+ ++ + + + + + L SATM V ++ R +R+PV+I
Sbjct: 164 SLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI 223
Query: 459 LVQKEELTLEGIKQFY 506
+ T++ +KQ Y
Sbjct: 224 EAASKYSTVDTLKQQY 239
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/78 (37%), Positives = 40/78 (51%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 247 DMILVVRFMPTPSNFLFL 300
D++ R FL L
Sbjct: 292 DLLERARVSMQMIRFLAL 309
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADV----QVILLSATMPDDVLEV 425
R + I+ LDEAD ML GF+ QI + + + Q +L SAT P + +
Sbjct: 296 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Query: 426 SRCFMRDPVRILV 464
+ FM + + + V
Sbjct: 356 AADFMSNYIFLAV 368
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/78 (37%), Positives = 40/78 (51%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVY 246
A+IL+PTRELA QI K GGT + + +R+LE G ++V TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 247 DMILVVRFMPTPSNFLFL 300
D++ R FL L
Sbjct: 292 DLLERARVSMQMIRFLAL 309
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADV----QVILLSATMPDDVLEV 425
R + I+ LDEAD ML GF+ QI + + + Q +L SAT P + +
Sbjct: 296 RARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRL 355
Query: 426 SRCFMRDPVRILV 464
+ FM + + + V
Sbjct: 356 AADFMSNYIFLAV 368
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 53.2 bits (122), Expect = 2e-07
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSR-GFKDQIHDVFKIL---SADVQVILLSATMPDDVLEVS 428
+ L N +K+ V DEAD ML+ GF+D + K + + + QV+L SAT + V +
Sbjct: 232 KRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFV 291
Query: 429 RCFMRDPVRILVQKEELTLEGIKQF 503
++DP ++ V++E+L L+ +KQ+
Sbjct: 292 ARTVKDPNQLFVKREDLALDSVKQY 316
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT-- 174
GKT F + +L ++D ++RE QAL + PTRELA Q +V+ +G + +
Sbjct: 143 GKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTR 202
Query: 175 NVREDIRQLESGVHVVVGTPG 237
R HVV+GTPG
Sbjct: 203 GAPAATRGAPVSAHVVIGTPG 223
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 GKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACI 165
GKT F + +L+ I D E L++APTREL QQI + L C
Sbjct: 445 GKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVY 504
Query: 166 GGTNVREDIRQLESGVHVVVGTPGRVYDMI 255
GG+ V + I +L+ G +VV TPGR+ D++
Sbjct: 505 GGSGVAQQISELKRGTEIVVCTPGRMIDIL 534
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+ V+DEAD M GF+ QI + + + D Q +L SAT P V ++R + PV I
Sbjct: 547 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQ 606
Query: 462 VQKEELTLEGIKQ 500
V + + I Q
Sbjct: 607 VGGRSVVNKDITQ 619
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +3
Query: 273 ANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPV 452
+ ++ + VLDEAD +LS G++D + V I+ Q +L+SAT DV ++ + + +P+
Sbjct: 198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPI 257
Query: 453 RILV----QKEELTLEGIKQFYM 509
+ + KEE ++QF++
Sbjct: 258 VLTLTEDNDKEEAVPSNVQQFWI 280
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Frame = +1
Query: 1 GKTATFSISILQQIDT--SIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT + + +LQ++ + S+ + + A IL P+REL QQ+ V +L + + A
Sbjct: 95 GKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAV 154
Query: 163 -IGGTNVREDIRQLESGV-HVVVGTP 234
+ + D+R +G+ ++V TP
Sbjct: 155 QLTSSMSASDMRNALAGLPEILVSTP 180
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +1
Query: 46 TSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVV 225
T R + ++L PTREL++Q+ +V ++ H + GG+ +R L + + +VV
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Query: 226 GTPGRVYDMI 255
GTPGR+ I
Sbjct: 245 GTPGRILQHI 254
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+K V+DEAD +L F++ ++ + KIL Q L SAT V +++R + PV +
Sbjct: 237 LKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVD 296
Query: 462 VQ--KEELTLEGIKQFY 506
V + ++T EG++Q Y
Sbjct: 297 VDDGRRKVTNEGLEQGY 313
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRVYD 249
+++ PTRELA Q + V L H + IGG N R + +++ SG ++V+ TPGR+ D
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHA 159
GKT F + ++ I S + +I++PTREL+ QI KV L N
Sbjct: 65 GKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVL 124
Query: 160 CIGGTNVREDIRQLES-GVHVVVGTPGRVYDMILVVRFM 273
+GG V D+ LE G ++++GTPGR+ DM+ + F+
Sbjct: 125 LVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFL 163
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +++ +LDEAD +L GF+ Q++ + L + L SAT V ++++ +R+
Sbjct: 163 LDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRN 222
Query: 447 PVRIL 461
+ ++
Sbjct: 223 AMEVI 227
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVV------IALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGT 231
LI+ P+RELA+Q +VV + + + CIGG ++R + ++ GVH+VV T
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 232 PGRVYDMI 255
PGR+ DM+
Sbjct: 286 PGRLKDML 293
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ + + + LDEAD ++ GF+D I +VF + Q +L SATMP + +R
Sbjct: 295 KKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSA 354
Query: 438 MRDPVRILV 464
+ PV + V
Sbjct: 355 LVKPVTVNV 363
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 6/69 (8%)
Frame = +1
Query: 67 ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIGGTNVREDIRQLESGVHVVVG 228
AL++ P+RELA+Q +++ V +L + + + CIGG ++R + ++ GVH+VV
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVA 235
Query: 229 TPGRVYDMI 255
TPGR+ D++
Sbjct: 236 TPGRLKDIL 244
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCF 437
++ + + +L LDEAD ++ GF+D I VF + Q +L SATMP + +
Sbjct: 246 KKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSA 305
Query: 438 MRDPVRILV 464
+ PV + V
Sbjct: 306 LVKPVTVNV 314
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 261 RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKILS-ADVQVILLSATMPDDVLEVSRCF 437
+ + + ++ VLDE+D++ + QI V K S + L SAT+PD V E++R
Sbjct: 276 KKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSI 335
Query: 438 MRDPVRILVQKEELTLEGIKQ 500
M D VR+++ ++ E +KQ
Sbjct: 336 MHDAVRVIIGRKNTASETVKQ 356
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/67 (40%), Positives = 35/67 (52%)
Frame = +1
Query: 55 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTP 234
R L+L PTRELA+Q+ A G L GG + +L+ GV +VVGTP
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTP 232
Query: 235 GRVYDMI 255
GR+ D I
Sbjct: 233 GRIKDHI 239
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL--SADVQVILLSATMPDDVLEVSR 431
R+ L + ++ VLDEADEML GF + + + + S VQ +L SAT+P V +S
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300
Query: 432 CFMR 443
F++
Sbjct: 301 RFLK 304
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+K V+DEAD +L + F++ + + +L Q L SAT V +++R + PV I
Sbjct: 302 LKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYID 361
Query: 462 VQ--KEELTLEGIKQFY 506
V ++E+T EG++Q Y
Sbjct: 362 VDEGRKEVTNEGLEQGY 378
Score = 41.5 bits (93), Expect = 6e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +1
Query: 1 GKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F ++ +L ++ + R L++ PTRELA Q V L + + IG
Sbjct: 203 GKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIG 262
Query: 169 GTNVREDIRQLESGVHVVVGTPGRVYD 249
G + + L GV+++V TPGR+ D
Sbjct: 263 GEKRKTEAEILAKGVNLLVATPGRLLD 289
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+++ +LDEAD +L FK Q+ + L Q +L SAT V +++R +RDP I
Sbjct: 219 LQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYIS 278
Query: 462 VQKEELT 482
V E +T
Sbjct: 279 VHAEAVT 285
Score = 32.7 bits (71), Expect = 0.28
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 168
GKT F I IL+++ + +I++PTRELA Q V+ +G IG
Sbjct: 120 GKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIG 179
Query: 169 GTNVREDIRQLESGVHVVVGTPGRV 243
G + ++ ++++V PGR+
Sbjct: 180 GREGVDVEKERVHEMNILVCAPGRL 204
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.8 bits (106), Expect = 2e-05
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHL-NAKCHA 159
GKT F + +++ + S + +I++PTREL+ QI V L N
Sbjct: 65 GKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVL 124
Query: 160 CIGGTNVREDIRQLES-GVHVVVGTPGRVYDMI 255
+GG V+ D++ +E G +V++GTPGR+ D++
Sbjct: 125 LVGGREVKADMKIIEEEGCNVLIGTPGRLSDIM 157
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/67 (32%), Positives = 40/67 (59%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +++ +LDEAD +L GF+ Q++ + L + L SAT + V E+++ +R+
Sbjct: 163 LDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRN 222
Query: 447 PVRILVQ 467
PVR+ V+
Sbjct: 223 PVRVEVR 229
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
+KLF++DEAD +L GFK + + L Q +L SAT+P +V VS+ ++
Sbjct: 532 LKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 585
Score = 44.4 bits (100), Expect = 8e-05
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTPGRV 243
LIL PTRELA QI A L +H IGGT R D ++LES +++ TPGR+
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 244 YDMI 255
D I
Sbjct: 516 LDHI 519
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 461
+K+ VLDEAD +L GF+ I + + + Q L SAT+P++V ++ +R +
Sbjct: 210 VKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHEFV 269
Query: 462 VQKEELTLEGIKQF-YMH*IRRME 530
E T+E +Q MH I ++
Sbjct: 270 NCVHEGTIETHQQVRQMHMIASLD 293
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 ALILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGR 240
AL++ PTRELA Q + L H + IGGT + + +++++ ++V TPGR
Sbjct: 133 ALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGR 192
Query: 241 VYDMI 255
+ D I
Sbjct: 193 LKDHI 197
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/64 (34%), Positives = 39/64 (60%)
Frame = +1
Query: 64 QALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVGTPGRV 243
+ALI+ PTRELA Q+ + + +L+ K +GG + R+L+ +VV TPGR+
Sbjct: 281 RALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Query: 244 YDMI 255
++++
Sbjct: 341 WELM 344
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 258 RRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKIL 365
+ + +++ FVLDEAD M+ RG ++ + +L
Sbjct: 349 KHLVELHSLSFFVLDEADRMVERGHFRELQSILDLL 384
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 44.8 bits (101), Expect = 6e-05
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIALGDHLNAKCHAC 162
GKT F + ++ I S + +I++PTREL+ QI KV A+ AKC
Sbjct: 66 GKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDF-AKCREV 124
Query: 163 IGGTNVREDIRQLESGVHVVVGTPGRVYDMILVVRFM 273
N E E G ++++GTPGR+ DM+ + F+
Sbjct: 125 EADMNTLE-----EEGANLLIGTPGRLSDMMKRMEFL 156
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMRD 446
L +++ +LDEAD +L GF+ Q++ + L + L SAT V ++++ +R+
Sbjct: 156 LDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRN 215
Query: 447 P 449
P
Sbjct: 216 P 216
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR 443
+KLF++DEAD +L GF+ + + L Q +L SAT+P +V VS+ ++
Sbjct: 485 LKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLK 538
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = +1
Query: 67 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVREDIRQLES-GVHVVVGTP 234
ALIL PTRELA QI K ++ D + + IGGT + D ++LES +++ TP
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLDQQRLESEPCQILIATP 465
Query: 235 GRVYDMI 255
GR+ D I
Sbjct: 466 GRLLDHI 472
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEV 425
+K+ VLDEAD +L GF+ I + + Q L SAT+P++V ++
Sbjct: 538 VKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 LILAPTRELAQQ-IQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG-VHVVVGTPGRV 243
L++ PTRELA Q + L H + IGGT + + R++++ ++V TPGR+
Sbjct: 462 LVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Query: 244 YDMI 255
D I
Sbjct: 522 KDHI 525
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Frame = +3
Query: 267 LHANTIKLFVLDEADEMLSRGFKDQIHDVFKILS--------------ADVQVILLSATM 404
LH + + VLDE DE+LS F++ IH + + + A+ Q IL+SAT+
Sbjct: 263 LHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATV 322
Query: 405 PDDVLEVSRCFMRDPVRILVQKEELT 482
P V+ ++ + +PV LVQ ++T
Sbjct: 323 PFSVIRAAKSWSHEPV--LVQANKVT 346
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 58 ECQALILAPTRELAQQI-QKVVIALGDHLNAKCHACIGGTN-VREDIRQLESGVHVVVGT 231
E QA+I+AP+REL QI ++V LG +GG N +R++ ++ +VVGT
Sbjct: 191 EIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGT 250
Query: 232 PGRVYDM 252
PGR+ ++
Sbjct: 251 PGRIAEI 257
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +3
Query: 282 IKLFVLDEADEMLSRGFKDQIHDVFKILSADVQVILLSATMPDDVLEVSRCFMR---DPV 452
+K+ VLDEAD +L GF+ +I + + Q L SAT+ D+V ++ ++ + V
Sbjct: 236 VKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFV 295
Query: 453 RILVQKEELTLEGIKQFYM 509
+ + T + + Q YM
Sbjct: 296 NCVQEGAGETHQKVSQMYM 314
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 LILAPTRELA-QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE-SGVHVVVGTPGRV 243
L++ PTRELA Q + I L H + IGGT + + R+L+ S ++V TPGR+
Sbjct: 160 LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRL 219
Query: 244 YDMI 255
D I
Sbjct: 220 KDHI 223
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 36.3 bits (80), Expect = 0.022
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +1
Query: 1 GKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQIQKVVIALG-DHLNAK 150
GKT + + ++Q++ S C + ++L PT ELA Q+ ++ + +
Sbjct: 423 GKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFR 482
Query: 151 CHACIGGTNVREDIRQLESGVHVVVGTPGR 240
GG R + LE GV V++ TPGR
Sbjct: 483 SMVVTGGFRQRTQLENLEQGVDVLIATPGR 512
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 1 GKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 117
GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 125 GKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 67 ALILAPTRELAQQIQKVVIALGDHLNAKCHACI-GGTNVREDIRQLESGVHVVVGTPGRV 243
AL++ PTREL Q+ + + L + + GG ++ +L G+ +++ TPGR+
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRL 166
Query: 244 YD 249
D
Sbjct: 167 LD 168
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +1
Query: 19 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 171
+++ L+++ +++EC +A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 267 AHDEYHIIYTTWSAHHHMNTTLQLANIFTDIGAT 166
+H H + T+ A H+N LQLAN GAT
Sbjct: 8 SHRRPHYLLVTFPAQGHINPALQLANRLIHHGAT 41
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 70 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 174
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 247 HIHDLECPPPHEHHSPVGEYLHGHWCHQCKHGI*HSSDHQ 128
H H+ EC H+H H H +C H H SDHQ
Sbjct: 606 HKHE-ECNHNHDHE----HQSHSHNHEECNHNHDHHSDHQ 640
>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
putative strong similarity to cytosine-5
methyltransferase (METII) [Arabidopsis thaliana]
GI:6523846; contains Pfam profiles PF01426: BAH domain,
PF00145: C-5 cytosine-specific DNA methylase
Length = 1512
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 115 VVIALGDHLNAKCHACIGGTNVREDIRQLESGVHVVVG 228
V+++L DH ++K H + +R D QL H+V G
Sbjct: 250 VLVSLRDHESSKIHKALSNVALRIDESQLVKSDHLVDG 287
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 37 QIDTSIREC-QALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 171
+++ +++EC +A+ P+ A Q++ + + LG+ NA+ H C+ G
Sbjct: 260 RLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSG 306
>At3g47150.1 68416.m05119 F-box family protein various predicted
proteins, Arabidopsis thaliana
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 361 FCQLMFKSYYSLLPCLMMYWKYLDAL*EILYAYLYRRKSLPWKV 492
F Q+ FK+Y + PC+M + Y D + E Y L +LPW++
Sbjct: 140 FPQIKFKNYPDIFPCIMYFLGY-DRI-EDQYKVL-AIDNLPWRL 180
>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
[Pinus sylvestris] gi|12054894|emb|CAC20842; contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 1124
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 631 HRFSEPIPPCDGCCRKLQ 578
+RFS P+PP G C+KLQ
Sbjct: 503 NRFSGPLPPEIGTCQKLQ 520
>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
(CHX13) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 831
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 220 VVGTPGRVYDMILVVRFMPTPSNFLFLMKLMKCCPEVSRTRSMMSS 357
V+ + G YDM+LV R S+ L+ + CPE+ M++S
Sbjct: 728 VISSLGDAYDMVLVGRDHDLESSVLYGLTDWSECPELGVIGDMLTS 773
>At2g15490.2 68415.m01773 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 270
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 261 DEYHIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSI 142
++ HI++ + AH HM L +A +F GA + + I
Sbjct: 4 EQIHILFFPFMAHGHMIPLLDMAKLFARRGAKSTLLTTPI 43
>At2g15490.1 68415.m01772 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 484
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 261 DEYHIIYTTWSAHHHMNTTLQLANIFTDIGATNASMAFSI 142
++ HI++ + AH HM L +A +F GA + + I
Sbjct: 4 EQIHILFFPFMAHGHMIPLLDMAKLFARRGAKSTLLTTPI 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,297,885
Number of Sequences: 28952
Number of extensions: 409969
Number of successful extensions: 1292
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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