Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30026
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 43 2e-04
01_01_1157 - 9203448-9203560,9204725-9204768,9205345-9205433,920... 38 0.009
12_01_0210 - 1593732-1593823,1594730-1594773,1594895-1594983,159... 36 0.049
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 35 0.065
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 35 0.065
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58... 34 0.11
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 34 0.11
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 33 0.20
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 31 1.1
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 31 1.1
12_01_0209 - 1583401-1583498,1583879-1583922,1584285-1584373,158... 31 1.4
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 31 1.4
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988... 30 2.4
11_01_0208 - 1628020-1628117,1628282-1628325,1628790-1628878,162... 29 4.3
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 29 4.3
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 29 4.3
10_02_0037 - 4441440-4443242 29 5.6
09_02_0311 + 7164774-7166327 29 5.6
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 7.4
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 28 7.4
05_04_0223 - 19192411-19192951,19193363-19193388 28 7.4
01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898... 28 7.4
09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508... 28 9.8
01_01_0123 - 1142557-1142744,1143281-1143497 28 9.8
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +2
Query: 251 VPFFASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
V A ++ ++S+V P+ + E +LT++Q +I G + A+ WG+V D +GR+
Sbjct: 34 VGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVGMLIGAYTWGVVSDNYGRR 92
>01_01_1157 -
9203448-9203560,9204725-9204768,9205345-9205433,
9205565-9205609,9205805-9205912,9206003-9206088,
9206492-9206579,9206725-9206910,9207181-9207256,
9207332-9207381,9207715-9207777,9207882-9207962,
9208028-9208130,9208246-9208348,9208489-9208549,
9209059-9209154,9209185-9209225,9209848-9209922,
9210412-9210562
Length = 552
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 FASGVQNCIMSYV--LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
F G+ +C S + L A+ E + Y AG + ++M G S+ WGIV D +GRK
Sbjct: 110 FTFGLNSCAGSVIRDLHIAKQEEDIGFY-AGFVGASYMFGRALSSVIWGIVADKYGRK 166
>12_01_0210 -
1593732-1593823,1594730-1594773,1594895-1594983,
1595076-1595120,1595457-1595564,1595647-1595732,
1595872-1595959,1596159-1596335,1596531-1596606,
1596709-1596758,1596834-1596896,1597152-1597254,
1597337-1597439,1597559-1597619,1598119-1598159,
1599790-1599961
Length = 465
Score = 35.5 bits (78), Expect = 0.049
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
Y AG + ++M G +A FWG+V D GRK
Sbjct: 86 YYAGFLGASYMVGRSFAAIFWGVVADRIGRK 116
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 35.1 bits (77), Expect = 0.065
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 299 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
L A+ E + Y AG + ++M G +A FWG+V D GRK
Sbjct: 29 LQVAQTEEDIGNY-AGFLGASYMVGRSFAAIFWGVVADRIGRK 70
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 35.1 bits (77), Expect = 0.065
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 263 ASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ ++ ++S+V + + E +L+ LI G + A+ WGIV D +GR+
Sbjct: 60 SEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVFVGMLVGAYSWGIVSDNYGRR 114
>04_01_0056 -
579934-579993,580064-580243,580349-580507,581004-581050,
583772-583895,584093-584956
Length = 477
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 518 VLAAAEVCSLERCFGLKLSLHPGATSSLGCSSCRRHRPLYPRRMHWRHHRS 366
V A V +++ C GL+ P T C RR RP+ P WRH+ S
Sbjct: 281 VAAMVSVLAVDSCIGLEFEPFPTRT----CFCARRRRPIPPDNDQWRHNVS 327
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +2
Query: 284 IMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRKSXXXXXXXXXXX 463
++S+V P R E ++ L++ +G + A WG V D +GR+
Sbjct: 234 LLSFVGPLVREEWNISAENESLLSSVVFAGMLIGASGWGFVSDKYGRRICLLFSTLFASG 293
Query: 464 XXXXQSTVPDYRLLLQLEPSMG 529
+ P+Y LL L +G
Sbjct: 294 MGFLSAFSPNYSCLLALRFLVG 315
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 299 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
L A+ E + Y AG + ++M G ++ FWG+V D GRK
Sbjct: 44 LHVAKKEQDIGLY-AGFLGASYMIGRCFASLFWGVVADRIGRK 85
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +2
Query: 251 VPFFASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGR 424
V + A ++ ++S+V P+ + E ++ GL++ +G + A G++ D +GR
Sbjct: 41 VGWVAEAMEVMLLSFVGPSVKAEWGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGR 98
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F PWRL GS+P + G+ ++PES
Sbjct: 211 FVPWRLLAVIGSIPCTLLIPGLFFIPES 238
>12_01_0209 -
1583401-1583498,1583879-1583922,1584285-1584373,
1584911-1585018,1585158-1585243,1585385-1585472,
1585970-1586140,1586379-1586454,1586534-1586583,
1586692-1586754,1586839-1586892,1587038-1587140,
1587265-1587367,1587479-1587569,1587629-1587669,
1587801-1587879
Length = 447
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 299 LPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
L AR E + Y AG + ++M G ++ WG+V D GRK
Sbjct: 54 LHVARTEEDIGFY-AGFLGASYMIGRGFASILWGMVADRIGRK 95
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ WGI D GRK
Sbjct: 81 FYAGFVGASFMFGRCLTSTIWGIAADRIGRK 111
>01_01_1224 -
9888726-9888820,9889042-9889085,9889194-9889282,
9889390-9889434,9889849-9889956,9890042-9890127,
9890324-9890411,9890669-9890872,9891251-9891326,
9891429-9891478,9891753-9891815,9891942-9891995,
9892079-9892181,9892266-9892368,9892563-9892623,
9892746-9892786,9893183-9893348
Length = 491
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + + G SA WGI D +GRK
Sbjct: 84 FYAGFVGATYFLGRTISAVPWGIFADKYGRK 114
>11_01_0208 -
1628020-1628117,1628282-1628325,1628790-1628878,
1628986-1629030,1629397-1629504,1629650-1629735,
1629870-1629957,1630275-1630445,1630718-1630793,
1630877-1630926,1631035-1631097,1631201-1631254,
1631398-1631500,1631626-1631728,1632038-1632098,
1632186-1632226,1632375-1632453
Length = 452
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + ++M G ++ WG+V D GRK
Sbjct: 55 FYAGFLGASYMIGRGFASILWGMVADRIGRK 85
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F PWRL G LP + G+ ++PES
Sbjct: 210 FVPWRLLAVIGILPCTVLIPGLFFIPES 237
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +2
Query: 110 NRPENRKPHSQRHGNLTRCHRRDGG----LRNRAGQSRVRPLQPECFRSVRV 253
+R EN ++Q GN + CH + G N + P +PE S+++
Sbjct: 75 SREENDDSYTQEVGNFSECHSSEHGNSGFSANNGTSGQATPQRPELMESLKI 126
>10_02_0037 - 4441440-4443242
Length = 600
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 508 AARTINGFIIGGPATLVFTYLSDLVGVKKRQFYLSMVGMSFV 633
AA + GF GG TL+F+ +S++ G+K +Y ++ + V
Sbjct: 452 AASVVVGFSFGGLYTLLFSIVSEVFGLK---YYATLYNLGMV 490
>09_02_0311 + 7164774-7166327
Length = 517
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 722 WRLFLAWGSLPGFMRESGVLYLPES 796
WRL LA ++P + +G L+LPE+
Sbjct: 201 WRLSLALAAVPAAVMTAGALFLPET 225
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 792 SGKYSTPDSRMKPGRLPQARNNLHGVN 712
SG P S KP +PQ++ N HG N
Sbjct: 1250 SGTVPQPRSHWKPKTIPQSQGNSHGNN 1276
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F PWR+ G LP + G+ ++PES
Sbjct: 188 FVPWRILSVLGILPCSILIPGLFFIPES 215
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 85 ANPK*WFRKSPRKSEAPFTEAWQPH*MPPKRWRITKPRWTKQ 210
A P W + S A +T WQ P+ R PRW +Q
Sbjct: 132 ARPTGWNAAAAPSSSASWTARWQGRRPAPRARRGGTPRWRRQ 173
>01_06_0518 +
29988613-29989193,29989596-29989622,29989759-29989891,
29990006-29990240,29990524-29990566,29990672-29990952,
29991293-29991423,29991812-29991946
Length = 521
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 125 RKPHSQRHGNLTRCHRRDGGLRNRAGQ 205
R P + RHG+ + CH G +N GQ
Sbjct: 183 RDPENGRHGSQSYCHHSPTGWKNFGGQ 209
>09_02_0157 +
5083771-5083996,5084007-5084326,5085958-5086392,
5087277-5087921
Length = 541
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 722 WRLFLAWGSLPGFMRESGVLYLPES 796
WR+ LA ++PG + G L+LPE+
Sbjct: 231 WRVSLAVAAVPGGLLTLGALFLPET 255
>01_01_0123 - 1142557-1142744,1143281-1143497
Length = 134
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 328 DDIPSRIDQHGFYERWCRQCI 390
DD +R+D+ RWCR C+
Sbjct: 111 DDPYTRVDEKSALGRWCRNCV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,494,741
Number of Sequences: 37544
Number of extensions: 585936
Number of successful extensions: 1538
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -