Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30026
(796 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13050.1 68416.m01626 transporter-related low similarity to a... 39 0.003
At5g13740.1 68418.m01599 sugar transporter family protein contai... 37 0.018
At3g43790.3 68416.m04680 transporter-related low similarity to S... 33 0.22
At3g43790.2 68416.m04679 transporter-related low similarity to S... 33 0.22
At3g43790.1 68416.m04678 transporter-related low similarity to S... 33 0.22
At5g13750.1 68418.m01600 transporter-related 32 0.38
At5g27360.1 68418.m03267 sugar-porter family protein 2 (SFP2) id... 30 2.0
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta... 29 2.7
At1g75220.1 68414.m08738 integral membrane protein, putative str... 29 3.6
At1g19450.1 68414.m02423 integral membrane protein, putative / s... 29 3.6
At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1) id... 29 4.7
At3g18830.1 68416.m02391 mannitol transporter, putative similar ... 29 4.7
At1g08890.1 68414.m00989 sugar transporter family protein simila... 29 4.7
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ... 28 6.2
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ... 28 6.2
At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier, p... 28 8.2
At3g03670.1 68416.m00370 peroxidase, putative similar to peroxid... 28 8.2
At2g40280.1 68415.m04958 dehydration-responsive family protein s... 28 8.2
At1g27640.1 68414.m03377 expressed protein 28 8.2
At1g14630.1 68414.m01739 hypothetical protein 28 8.2
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = +2
Query: 263 ASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFGRKSXXXX 442
A ++ ++S+V PA + L+ Q LI +G + A+ WGIV D GR+
Sbjct: 36 AEAMEMMLLSFVGPAVQSLWNLSARQESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFII 95
Query: 443 XXXXXXXXXXXQSTVPDYRLLLQLEPSMG 529
+ P+Y L+ L +G
Sbjct: 96 TAVVTFVAGFLSAFSPNYMWLIILRCLVG 124
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ FWGIV D +GRK
Sbjct: 78 FYAGFVGCSFMLGRALTSVFWGIVADRYGRK 108
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ FWG + D +GRK
Sbjct: 76 FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ FWG + D +GRK
Sbjct: 76 FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ FWG + D +GRK
Sbjct: 76 FYAGFVGSSFMIGRALTSIFWGKLADRYGRK 106
>At5g13750.1 68418.m01600 transporter-related
Length = 478
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 335 YQAGLINMAFMSGGVASAFFWGIVGDVFGRK 427
+ AG + +FM G ++ WG+V D +GRK
Sbjct: 77 FYAGFVGCSFMLGRAFTSVAWGLVADRYGRK 107
>At5g27360.1 68418.m03267 sugar-porter family protein 2 (SFP2)
identical to sugar-porter family protein 2 [Arabidopsis
thaliana] GI:14585701
Length = 478
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 704 SCQFTPWRLFLAWGSLPGFMRESGVLYLPES 796
S F WR+ G+LP F++ G+ ++PES
Sbjct: 180 SGNFLNWRILALLGALPCFIQVIGLFFVPES 210
>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 502
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 257 FFASGVQNCIMSYVLPAARCELQLTTYQAGLINMAFMSGGVASAFFWGIVGDVFG 421
FF V +LP R L LT G +A +SG V + G D+FG
Sbjct: 54 FFCCFVSTFAAPPLLPVIRENLNLTATDIGNAGIASVSGAVFARIVMGTACDLFG 108
>At1g75220.1 68414.m08738 integral membrane protein, putative strong
similarity to integral membrane protein GI:1209756 from
[Beta vulgaris]; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 487
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F PWR+ G LP + G+ ++PES
Sbjct: 196 FVPWRILAVLGILPCTLLIPGLFFIPES 223
>At1g19450.1 68414.m02423 integral membrane protein, putative /
sugar transporter family protein similar to GB:U43629
GI:1209756 integral membrane protein from [Beta
vulgaris]; contains Pfam profile PF00083: major
facilitator superfamily protein; contains TIGRfam
TIGR00879: Sugar transporter
Length = 488
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F PWR+ G LP + G+ ++PES
Sbjct: 197 FVPWRILAVLGVLPCTLLIPGLFFIPES 224
>At5g27350.1 68418.m03266 sugar-porter family protein 1 (SFP1)
identical to sugar-porter family protein 1 [Arabidopsis
thaliana] GI:14585699
Length = 474
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 713 FTPWRLFLAWGSLPGFMRESGVLYLPES 796
F WR G+LP F++ G+ ++PES
Sbjct: 179 FITWRTLALLGALPCFIQVIGLFFVPES 206
>At3g18830.1 68416.m02391 mannitol transporter, putative similar to
mannitol transporter [Apium graveolens var. dulce]
GI:12004316; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 539
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 722 WRLFLAWGSLPGFMRESGVLYLPES 796
WRL L G++P + GVL +PES
Sbjct: 194 WRLMLGIGAVPSVILAIGVLAMPES 218
>At1g08890.1 68414.m00989 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 464
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +2
Query: 242 SVRVPFFASGVQNCIMSYVLPAARC---ELQLTTYQAGLINMAFMSGGVASAFFWGIVGD 412
S V S V C MSY PA EL L+ GG+ +A F G +
Sbjct: 30 STSVAVTGSFVYGCAMSYSSPAQSKIMEELGLSVADYSFFTSVMTLGGMITAAFSGKIAA 89
Query: 413 VFGRK 427
V GR+
Sbjct: 90 VIGRR 94
>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 532 IIGGPATLVFTYLSDLVGVKKRQFYLSMVG 621
++G P+T + YL+D G++K Q + MVG
Sbjct: 278 VVGKPSTFMMDYLADKFGIQKSQ--ICMVG 305
>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 532 IIGGPATLVFTYLSDLVGVKKRQFYLSMVG 621
++G P+T + YL+D G++K Q + MVG
Sbjct: 278 VVGKPSTFMMDYLADKFGIQKSQ--ICMVG 305
>At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier,
putative / a bout de souffle (BOU) / CAC-like protein
identical to SP|Q93XM7 Mitochondrial
carnitine/acylcarnitine carrier-like protein (A BOUT DE
SOUFFLE) (Carnitine/acylcarnitine translocase-like
protein) (CAC-like protein) {Arabidopsis thaliana};
contains Pfam profile: PF00153 mitochondrial carrier
protein
Length = 300
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 365 MSGGVASAFFWGIV 406
M+GGVA A FWGIV
Sbjct: 218 MAGGVAGASFWGIV 231
>At3g03670.1 68416.m00370 peroxidase, putative similar to peroxidase
GB:CAA66966 [Arabidopsis thaliana]
Length = 321
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 633 CGLVTFACTRLDGDSI*NPGLSNALANLLRGGCSLPG 743
CG T G + +P + LA LR C++PG
Sbjct: 196 CGNFVDRVTNFQGTGLPDPSMDPTLAGRLRNTCAVPG 232
>At2g40280.1 68415.m04958 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 589
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -2
Query: 486 TVLWAKVIAASRSNVKLRVLFLPKTSPTIPQKNALATPPLIKAMLINPAWYV--VSCSSH 313
++ W V S+ V++ TS + K + PPL N +WYV C S
Sbjct: 329 SICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCDKKEANGSWYVPLAKCLSK 388
Query: 312 LAAG 301
L +G
Sbjct: 389 LPSG 392
>At1g27640.1 68414.m03377 expressed protein
Length = 147
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 104 SENRPENRKPHSQRHGNLTRCHRRDGGLRNRAGQSRVR 217
SE RK ++H HR + L+NRAG+ R R
Sbjct: 5 SETEQYKRKAEIEKHTKEPNKHRDEAVLQNRAGRHRDR 42
>At1g14630.1 68414.m01739 hypothetical protein
Length = 151
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 98 NGSENRPENRKPHSQRHGNLT 160
NG+E++P+N HSQ H L+
Sbjct: 30 NGAEDKPDNDLDHSQNHWGLS 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,963,640
Number of Sequences: 28952
Number of extensions: 436197
Number of successful extensions: 1076
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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