Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30024
(540 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 184 1e-45
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 120 2e-26
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 100 2e-20
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 100 4e-20
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 98 1e-19
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 97 2e-19
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 96 4e-19
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 95 7e-19
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 94 2e-18
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 93 5e-18
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 89 5e-17
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 87 2e-16
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 87 3e-16
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 79 5e-14
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 78 1e-13
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 77 2e-13
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 77 3e-13
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 76 6e-13
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 75 1e-12
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 74 2e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 67 3e-10
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 63 5e-09
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 61 1e-08
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 56 5e-07
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 54 2e-06
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 47 2e-04
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 47 2e-04
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 44 0.002
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 39 0.085
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.11
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 38 0.15
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 38 0.20
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 0.60
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 36 0.60
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 33 5.6
UniRef50_Q1DLT5 Cluster: Putative uncharacterized protein; n=1; ... 32 7.3
UniRef50_UPI0000660030 Cluster: Homolog of Homo sapiens "Homo sa... 32 9.7
UniRef50_Q2JYJ6 Cluster: Putative kinase/esterase protein; n=1; ... 32 9.7
UniRef50_A6PPY5 Cluster: Alpha-L-rhamnosidase; n=1; Victivallis ... 32 9.7
UniRef50_A4RKD3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.7
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 184 bits (448), Expect = 1e-45
Identities = 86/88 (97%), Positives = 86/88 (97%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL
Sbjct: 122 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 181
Query: 435 GNFKLPKHFNDDYFKKNKKCVKRTVNAK 518
GNFKLPKHFNDDYFKKNKKCVKRTV K
Sbjct: 182 GNFKLPKHFNDDYFKKNKKCVKRTVKRK 209
Score = 153 bits (372), Expect = 2e-36
Identities = 74/85 (87%), Positives = 74/85 (87%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFY 180
GVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVPLKRRKSFY
Sbjct: 37 GVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFY 96
Query: 181 PTQEKIRASSGGRPFSKHVRRIRPN 255
PTQEKIRASSGGRPFSKHVRRIRPN
Sbjct: 97 PTQEKIRASSGGRPFSKHVRRIRPN 121
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 120 bits (289), Expect = 2e-26
Identities = 58/85 (68%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV ILLAGRH GKRVVL+ +L SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG F
Sbjct: 117 GTVLILLAGRHQGKRVVLLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAF 176
Query: 444 KLPKHFNDDYFKKNK-KCVKRTVNA 515
K+P+H ND YF++ K K K+T A
Sbjct: 177 KVPEHLNDAYFRRLKAKKDKKTGEA 201
Score = 61.7 bits (143), Expect = 1e-08
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFY 180
G++R+SK++M+ ++A Y+ VK+IGG KNGG RTV LK+ K+ Y
Sbjct: 29 GILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLKKSKASY 88
Query: 181 PTQEKIRASSGGRPFSKHVRRIRPN 255
PT+ ++ FS+H R R N
Sbjct: 89 PTKTFVKKRPSKANFSEHKRNTRRN 113
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 100 bits (239), Expect = 2e-20
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +3
Query: 249 TQLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 428
+ ++ GTV ILLAG H GKRV+ + L SGLLLVTGPF +N PLRR+ Q YVI TSTRI
Sbjct: 89 SSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQCYVIATSTRI 148
Query: 429 SLGNFKLPKHFNDDYFKK 482
+ F +PKH +D+YF++
Sbjct: 149 DISKFDVPKHIDDEYFRR 166
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 99.5 bits (237), Expect = 4e-20
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QRYVI T TRI + N
Sbjct: 100 GKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQRYVIATKTRIKIKNI 159
Query: 444 KLPKHFNDDYFKKNKKCVKRTVN 512
K+P ND++F++ K++V+
Sbjct: 160 KIPSQLNDEFFRRQDLKTKKSVD 182
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 98.3 bits (234), Expect = 1e-19
Identities = 45/75 (60%), Positives = 53/75 (70%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GT+ I+L GRH GKRVV + L SGLLLVTGP N PLRR Q++VI TST+I + N
Sbjct: 147 GTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNV 206
Query: 444 KLPKHFNDDYFKKNK 488
K+PKH D YFKK K
Sbjct: 207 KIPKHLTDAYFKKKK 221
Score = 66.5 bits (155), Expect = 4e-10
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRR 168
G+ R+S+S M+ +KA KY L V K +GG+KNGGTR V L++
Sbjct: 53 GIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKM 112
Query: 169 KSFYPTQEKIR--ASSGGRPFSKHVRRIR 249
+YPT++ R S G +PFS+HVR++R
Sbjct: 113 PRYYPTEDVPRKLLSHGKKPFSQHVRKLR 141
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 97.1 bits (231), Expect = 2e-19
Identities = 49/95 (51%), Positives = 64/95 (67%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
L+ GT+ ILLAG + GKRVVL+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI +
Sbjct: 95 LQPGTILILLAGVNRGKRVVLLKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDI 154
Query: 435 GNFKLPKHFNDDYFKKNKKCVKRTVNAKRVMTSLP 539
N K+P+H ND YF+++K VK+ + S P
Sbjct: 155 SNVKVPEHINDTYFRRHK--VKKEAKEGDIFASKP 187
Score = 38.3 bits (85), Expect = 0.11
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 103 VVVKQIGGEKNGGTRTVPLKRRKSFYPTQEK 195
V+ K+IGG+KNGGTR V ++ FYP +
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSR 74
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 96.3 bits (229), Expect = 4e-19
Identities = 52/83 (62%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV ILLAG H GKRVV + L SGLLLVTGPF N PLRRIPQ YVI TST I + +
Sbjct: 103 GTVLILLAGAHRGKRVVFLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDV 162
Query: 444 KLPKH-FNDD-YFKKNKKCVKRT 506
KLP+H F D+ YFK K KR+
Sbjct: 163 KLPEHAFADESYFKGEPKKKKRS 185
Score = 49.6 bits (113), Expect = 5e-05
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFY 180
G+ R+S+S ++ K+A YK T K IGG+KNGG R VP++R +Y
Sbjct: 18 GISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQRESRYY 76
Query: 181 PTQE 192
PT++
Sbjct: 77 PTED 80
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 95.5 bits (227), Expect = 7e-19
Identities = 46/75 (61%), Positives = 54/75 (72%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV ILLAG H GKRVV + L +GLL VTGP+ N CPLRRI Q YVI TST++ L
Sbjct: 123 GTVLILLAGPHRGKRVVFLKQLKTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKV 182
Query: 444 KLPKHFNDDYFKKNK 488
KLP+ +D YFK+NK
Sbjct: 183 KLPEGLDDRYFKRNK 197
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/64 (42%), Positives = 37/64 (57%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSFY 180
GV FS+SKMFHK+ +K V VK++ GEKNGG R +PLK+ + Y
Sbjct: 33 GVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLKKERRSY 92
Query: 181 PTQE 192
PT++
Sbjct: 93 PTED 96
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 93.9 bits (223), Expect = 2e-18
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGN 440
GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS ++++
Sbjct: 74 GTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSG 133
Query: 441 FKLPKHFNDDYFKKNKKCVKRTVN 512
K+P+H ND+YFK+ K N
Sbjct: 134 VKIPEHINDEYFKRKSTAQKTGKN 157
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 92.7 bits (220), Expect = 5e-18
Identities = 46/84 (54%), Positives = 56/84 (66%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI QRYVI TST+I + +
Sbjct: 94 GTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSV 153
Query: 444 KLPKHFNDDYFKKNKKCVKRTVNA 515
K+ ND YF KK ++ A
Sbjct: 154 KVAATINDAYFAAEKKSTTKSEGA 177
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 89.4 bits (212), Expect = 5e-17
Identities = 41/89 (46%), Positives = 63/89 (70%)
Frame = +3
Query: 249 TQLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 428
+ L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N P+RR+ Y+I TST++
Sbjct: 37 SSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGVPVRRVNPAYIIATSTKV 96
Query: 429 SLGNFKLPKHFNDDYFKKNKKCVKRTVNA 515
+ + K F D+YFK ++ +K++ +A
Sbjct: 97 DVSKADVSK-FTDEYFKVDRSKLKKSKDA 124
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 87.4 bits (207), Expect = 2e-16
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Frame = +3
Query: 243 DPTQLKI----GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 410
+PT+L+ GTV ILLAGR GKRVV + L SGLLLVTGPF N P+RR+ Q YVI
Sbjct: 70 NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVI 129
Query: 411 GTSTRISLGNFKLPKHFNDDYFKKNKK 491
TST++ + + K F+D YF ++KK
Sbjct: 130 ATSTKVDISGVNVEK-FDDKYFSRDKK 155
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 86.6 bits (205), Expect = 3e-16
Identities = 44/73 (60%), Positives = 51/73 (69%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV I+LAGR GKRVV + L SGLLLVTGPF N PLRR+ Q YVIGTST++ +
Sbjct: 92 GTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGV 151
Query: 444 KLPKHFNDDYFKK 482
L K F+D YF K
Sbjct: 152 TLDK-FDDKYFGK 163
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 79.4 bits (187), Expect = 5e-14
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 428
LK G V ILL G + GKRVVL+ +L SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 44 LKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 78.2 bits (184), Expect = 1e-13
Identities = 42/84 (50%), Positives = 51/84 (60%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
GTV ILLAGR GKRVV + L LL++GPF N PLRR+ RYVI TST++S+
Sbjct: 37 GTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGV 96
Query: 444 KLPKHFNDDYFKKNKKCVKRTVNA 515
+ K FN +YF K K K A
Sbjct: 97 NVEK-FNVEYFAKEKLTKKEKKEA 119
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 77.4 bits (182), Expect = 2e-13
Identities = 39/75 (52%), Positives = 48/75 (64%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNF 443
G V ILL+GR GKRVV + L SGLLLVTGPF N PL+R+ YVI TST++ +
Sbjct: 61 GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKINGVPLKRVNSAYVIPTSTKVDVTGV 120
Query: 444 KLPKHFNDDYFKKNK 488
NDDYFK+ +
Sbjct: 121 N-ANQINDDYFKRTQ 134
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 76.6 bits (180), Expect = 3e-13
Identities = 42/85 (49%), Positives = 54/85 (63%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
+K GT+ ILLAG G RVV++ L SG LLVTGP+A N PL R+ QRYVI TST I +
Sbjct: 72 IKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDV 131
Query: 435 GNFKLPKHFNDDYFKKNKKCVKRTV 509
+ K ++ YF+K +K K V
Sbjct: 132 SKVDV-KKIDNAYFRKPQKKKKTDV 155
Score = 36.7 bits (81), Expect = 0.34
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 97 LTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEK 195
+ ++ K IGG KNGG R VP K+ +YP +K
Sbjct: 20 IKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK 52
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 75.8 bits (178), Expect = 6e-13
Identities = 39/72 (54%), Positives = 45/72 (62%)
Frame = +3
Query: 267 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFK 446
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + K
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 447 LPKHFNDDYFKK 482
KH D FKK
Sbjct: 73 TSKHLTDASFKK 84
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 74.5 bits (175), Expect = 1e-12
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
L+ GT+ ILLAGR GKRV+L+ L G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 58 LQPGTILILLAGRFRGKRVILLKHLGQGVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
Query: 435 GNF---KLPKHFNDDYFKKNK 488
L K +YF + K
Sbjct: 118 NGVDQKTLEKVSQPEYFTREK 138
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 73.7 bits (173), Expect = 2e-12
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR+ RYVI TS ++ L
Sbjct: 42 GTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRRVNARYVIATSQKVDL 98
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 66.9 bits (156), Expect = 3e-10
Identities = 28/60 (46%), Positives = 41/60 (68%)
Frame = +3
Query: 249 TQLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 428
+ +++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 72 SSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 62.9 bits (146), Expect = 5e-09
Identities = 32/68 (47%), Positives = 43/68 (63%)
Frame = +3
Query: 303 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKK 482
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF K
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYFAK 214
Query: 483 NKKCVKRT 506
+ +R+
Sbjct: 215 KVQKKRRS 222
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 61.3 bits (142), Expect = 1e-08
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGN 440
G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TST + + +
Sbjct: 36 GAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISS 95
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 56.0 bits (129), Expect = 5e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +3
Query: 339 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNK 488
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYFK+ K
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYFKRTK 59
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.0 bits (124), Expect = 2e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +3
Query: 216 PSIQQACTQDPTQ----LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPL 383
P ++ AC P + LK+GTV I++ G H GKR V+V +G++ + GP P+
Sbjct: 39 PLVKPACAAKPVETRPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PV 94
Query: 384 RRIPQRYVIGTSTRISL 434
I Q Y+I TST I +
Sbjct: 95 NEISQDYLIATSTSIEV 111
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 47.2 bits (107), Expect = 2e-04
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +3
Query: 258 KIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLG 437
KIG + I+ + GK+ V +G G LL++G FN +I +YV+ + +
Sbjct: 43 KIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVVKSGVSLKGL 102
Query: 438 NFKLPKHFNDDYFKKNKK 491
NF L KH N DY ++ KK
Sbjct: 103 NF-LTKHTNKDYLEELKK 119
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 47.2 bits (107), Expect = 2e-04
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +3
Query: 249 TQLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 428
T L G V ++L G A +RVV + L + L GP + N PL RI +RY++ TST +
Sbjct: 25 TDLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSINGIPLFRIDERYLLATSTVL 84
Query: 429 SL 434
L
Sbjct: 85 DL 86
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 44.4 bits (100), Expect = 0.002
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 267 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 431
TV I++ G+H +RVV + L G LL+TGP A N L R Q+ V+ TST I+
Sbjct: 138 TVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
Score = 32.3 bits (70), Expect = 7.3
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 1 GVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPLKRRKSF 177
G R+S ++ +K Y + + V+K + G+KNGGT V L++ K +
Sbjct: 56 GTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKLQKMKMY 112
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 38.7 bits (86), Expect = 0.085
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 407
+ +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 38.3 bits (85), Expect = 0.11
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 434
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 37.9 bits (84), Expect = 0.15
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILP 332
+K G VCI+L GRHAGK+ V+V LP
Sbjct: 6 IKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 37.5 bits (83), Expect = 0.20
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 255 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 392
+++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 4 IEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 0.60
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 306 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 431
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 35.9 bits (79), Expect = 0.60
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = +3
Query: 264 GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCP 380
GTV I+LAGR VV + L SGLLL+TG F N P
Sbjct: 235 GTVLIILAGR-----VVFLKQLSSGLLLITGSFKINDVP 268
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 32.7 bits (71), Expect = 5.6
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 303 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 470
+ +V G + GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_Q1DLT5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 860
Score = 32.3 bits (70), Expect = 7.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -2
Query: 305 LACMSTSEENANSSYLQLGRILRTCLLNGRPPDEAR 198
++CM +SE +A + YLQLG +R L R EAR
Sbjct: 226 VSCMQSSELSAEARYLQLGADIREELYKARQAREAR 261
>UniRef50_UPI0000660030 Cluster: Homolog of Homo sapiens "Homo
sapiens mRNA related with psoriasis, complete cds; n=3;
Clupeocephala|Rep: Homolog of Homo sapiens "Homo sapiens
mRNA related with psoriasis, complete cds - Takifugu
rubripes
Length = 113
Score = 31.9 bits (69), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 311 CTCWNSAQRSAFSYWTF-CFQFVPATPYSSALC 406
C CW+ + F++W F CF + A LC
Sbjct: 25 CDCWSDLPQCCFAFWCFPCFACITAREAGECLC 57
>UniRef50_Q2JYJ6 Cluster: Putative kinase/esterase protein; n=1;
Rhizobium etli CFN 42|Rep: Putative kinase/esterase
protein - Rhizobium etli (strain CFN 42 / ATCC 51251)
Length = 588
Score = 31.9 bits (69), Expect = 9.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 345 KADRWAEFQQVQPSCLHVYQRGECKQFLSSVGSDPAYMLAEWTAT 211
K+D +EF+ ++P Y R + F+ + G DP ++ AEW T
Sbjct: 96 KSDYASEFRIIRPDGAIRYLRSRARYFVDAAG-DPCFVGAEWDVT 139
>UniRef50_A6PPY5 Cluster: Alpha-L-rhamnosidase; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Alpha-L-rhamnosidase -
Victivallis vadensis ATCC BAA-548
Length = 763
Score = 31.9 bits (69), Expect = 9.7
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 334 LGRIPTSTTLLPACLPARRMQTVPIFSWV 248
LGR LL C PAR T+PIFSW+
Sbjct: 428 LGRGIRPDGLLELCAPARVPVTIPIFSWI 456
>UniRef50_A4RKD3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1009
Score = 31.9 bits (69), Expect = 9.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 170 SPSTPLRRKSVLHLVAVHSASMYAGSDPTEDRNCLHSPRW 289
S T L R S+L + + A +G++ E +N +HSP W
Sbjct: 505 SSGTRLHRLSLLPKLMIGKARKQSGTESAESQNNVHSPEW 544
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,872,608
Number of Sequences: 1657284
Number of extensions: 10878143
Number of successful extensions: 28803
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 27895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28761
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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