Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30015
(660 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 173 4e-42
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 172 5e-42
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 143 4e-33
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 136 6e-31
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 119 5e-26
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 109 8e-23
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 103 5e-21
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 103 5e-21
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 100 6e-20
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 96 6e-19
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 93 5e-18
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 82 1e-14
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 76 9e-13
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 70 6e-11
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 65 2e-09
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 64 2e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 61 2e-08
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 61 3e-08
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 60 4e-08
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 55 1e-06
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 52 9e-06
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 52 1e-05
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 50 5e-05
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 48 2e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 47 5e-04
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 45 0.002
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 44 0.003
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 43 0.006
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 42 0.010
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 42 0.010
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 41 0.023
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 41 0.030
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.16
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 37 0.37
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 37 0.49
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 36 0.65
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 35 1.5
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q7NZC0 Cluster: Probable cobalamin biosynthesis transme... 33 4.6
UniRef50_Q6N2I6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.6
UniRef50_Q7XVT3 Cluster: OSJNBa0041M21.3 protein; n=3; Oryza sat... 33 6.1
UniRef50_Q22933 Cluster: Putative uncharacterized protein; n=1; ... 33 6.1
UniRef50_P53008 Cluster: Mannosyl-oligosaccharide glucosidase; n... 33 6.1
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 33 8.0
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 173 bits (420), Expect = 4e-42
Identities = 82/163 (50%), Positives = 104/163 (63%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++LRK
Sbjct: 3 GLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRK 62
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
RCNVNPARGPFHFRAPS+I +K V K + L G P
Sbjct: 63 RCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVV 122
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGK 491
C VGRLSHE+GW Y+DV++ LE KRK K
Sbjct: 123 PIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAK 165
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 172 bits (419), Expect = 5e-42
Identities = 86/164 (52%), Positives = 102/164 (62%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++LRK
Sbjct: 3 GLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYLRK 62
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
RCNVNPARGPFHFRAPS++LWK V K L G P
Sbjct: 63 RCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCV 122
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C VGR++HE+GWKYRDVV LE KRK K+
Sbjct: 123 PTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKS 166
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGM+PHKT+RG NAL+RL+ Y+G P PFD CL+P RK
Sbjct: 87 RGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRK 136
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 143 bits (346), Expect = 4e-33
Identities = 74/169 (43%), Positives = 97/169 (57%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 195 NPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXX 374
NP RGPFHFR+P++ILW+T+ K L G P
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 375 XXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVP*KET 521
C +GRL+ E+GW++ D+V +LE+KRK K+ K+T
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKT 172
Score = 55.6 bits (128), Expect = 1e-06
Identities = 25/50 (50%), Positives = 29/50 (58%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGMIPHKT RG AL RL+ ++G PPP+D LKPGRK
Sbjct: 84 RGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRK 133
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 136 bits (328), Expect = 6e-31
Identities = 68/164 (41%), Positives = 91/164 (55%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLRK
Sbjct: 6 GISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLRK 65
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
R N P+ GP HFRAPSKILW+T+ K L G P
Sbjct: 66 RMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVI 125
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C +G+LS E+GW + D +++LEDKRK +A
Sbjct: 126 PDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRKERA 169
Score = 50.8 bits (116), Expect = 3e-05
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFD 340
RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 90 RGMIPHKTKRGAAALARLKVYEGVPPPYD 118
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 119 bits (287), Expect = 5e-26
Identities = 64/161 (39%), Positives = 84/161 (52%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 191
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 192 VNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXX 371
NP RG HFRAPS+I W+ V K L G P
Sbjct: 135 HNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDA 194
Query: 372 XXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C +G LS +GW + ++ KLE+KR+ +A
Sbjct: 195 LKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARA 235
Score = 43.2 bits (97), Expect = 0.006
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFD 340
RGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 156 RGMLPHKTPKGAAALERLKIFEGIPTPYD 184
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 109 bits (261), Expect = 8e-23
Identities = 63/159 (39%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLI-TXXXXXXXXXXX 377
+GPFH RAPS + +TV + L V G ++ T
Sbjct: 85 TKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQR 144
Query: 378 XXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
+G + +GWKY DVV LE R KA
Sbjct: 145 HVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKA 183
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 103 bits (246), Expect = 5e-21
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 195 NPARGPFHFRAPSKILWKT 251
NP+RGP+ F+APS+I W T
Sbjct: 64 NPSRGPYRFQAPSRIFWWT 82
Score = 39.9 bits (89), Expect = 0.053
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 411 HVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
++GRL+H++GWKY+ V LE+ RK KA
Sbjct: 106 YLGRLAHKVGWKYQAVTATLEENRKEKA 133
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 103 bits (246), Expect = 5e-21
Identities = 55/161 (34%), Positives = 80/161 (49%)
Frame = +3
Query: 12 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 191
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 192 VNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXX 371
NP +GP+H+ +PS++ WKTV K + G P
Sbjct: 62 TNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEA 121
Query: 372 XXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C +G +IGWK+ +V++LE KR+ A
Sbjct: 122 LKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQTAA 162
Score = 42.7 bits (96), Expect = 0.008
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFD 340
RGM+PHKT RG A R + Y+G P P+D
Sbjct: 83 RGMLPHKTVRGAAAFERFKAYEGIPAPYD 111
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 99.5 bits (237), Expect = 6e-20
Identities = 62/179 (34%), Positives = 84/179 (46%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXXXX 380
GPFH RAP +I + V K G ++
Sbjct: 65 RDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRC 124
Query: 381 XXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVP*KET*EDHQGCW*ESV 557
+GRLS +GWKY +VV +LE++RK ++ K K+ +D + E V
Sbjct: 125 VSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDKRAAAIEKV 183
Score = 35.9 bits (79), Expect = 0.86
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPF 337
RGMIP+KT RG +A L+ Y+G P +
Sbjct: 83 RGMIPYKTHRGADAFANLQCYEGIPAKY 110
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 96.3 bits (229), Expect = 6e-19
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLIT-XXXXXXXXXXX 377
RGPFHFRAP++I+ +T+ K +V + + + P
Sbjct: 64 LRGPFHFRAPAEIVRRTIRGMIPYK-TVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMA 122
Query: 378 XXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKR 482
C VGR++HEIGW++ V + E +R
Sbjct: 123 YLCLRPERRRCEVGRVAHEIGWQHAADVERYEKRR 157
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGMIP+KT RG +A+ RLR YDG PP CL+P R+
Sbjct: 82 RGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERR 131
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 93.1 bits (221), Expect = 5e-18
Identities = 38/81 (46%), Positives = 60/81 (74%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 195 NPARGPFHFRAPSKILWKTVE 257
NP RGPFHF++PSKIL++T++
Sbjct: 62 NPRRGPFHFKSPSKILYQTIK 82
Score = 34.7 bits (76), Expect = 2.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 260 MIPHKTERGKNALRRLRTYDGCPPPF 337
MIPHKT RG AL+ L+ ++G P F
Sbjct: 84 MIPHKTMRGSKALKNLKIFEGLPRIF 109
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 188
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 189 NVNPARGPFHFRAPSKILWK 248
N NP RG FH R+P++++ K
Sbjct: 68 NTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 75.8 bits (178), Expect = 9e-13
Identities = 48/155 (30%), Positives = 68/155 (43%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXXXX 380
RGPFHFR P L K + K+ + + G L
Sbjct: 67 RRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPREL-EGQPRYKVTCAFV 125
Query: 381 XXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRK 485
+G+L GWK+ + + L D+ K
Sbjct: 126 KYTGNPNRYVTLGKLLSMFGWKHAEAAKSLTDELK 160
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 69.7 bits (163), Expect = 6e-11
Identities = 38/91 (41%), Positives = 52/91 (57%)
Frame = +3
Query: 45 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 224
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 225 APSKILWKTVEA*SHTKQSVARMLLGGYVHM 317
+ HT+ SVAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +3
Query: 9 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 188
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 189 NVNPARGPFHFRAPSKILWKTV 254
+NP GP H+R P I+ K +
Sbjct: 70 IINPKHGPVHYRRPDTIITKMI 91
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 64.5 bits (150), Expect = 2e-09
Identities = 28/77 (36%), Positives = 47/77 (61%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 204 RGPFHFRAPSKILWKTV 254
GP+H R P I+ + +
Sbjct: 61 HGPYHPRRPDTIMTRMI 77
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 61.3 bits (142), Expect = 2e-08
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSFLRKRCN 191
+AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L ++ +
Sbjct: 6 EAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTY 65
Query: 192 VNP-ARGPFHFRAPSKILWKTVEA*SHTKQSVAR 290
NP RGP + + P ++ + V ++++ R
Sbjct: 66 YNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGR 99
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 60.9 bits (141), Expect = 3e-08
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 195 NPARGPFHFRAPSKILWKTVE 257
NP +GP+ F PS +L K V+
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVK 83
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 60.5 bits (140), Expect = 4e-08
Identities = 44/148 (29%), Positives = 58/148 (39%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R H+L RLA++IAK LL G +VV R N P
Sbjct: 12 VVVDARHHMLSRLASIIAKELLNGKRVV--------------------------RMNTKP 45
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXXXX 380
+ GP HFR+P+KILW+TV K L P
Sbjct: 46 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKV 105
Query: 381 XXXXXXXXXCHVGRLSHEIGWKYRDVVR 464
C +G+LS E+GW Y D +R
Sbjct: 106 LRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG K
Sbjct: 64 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHK 113
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 55.2 bits (127), Expect = 1e-06
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVN 197
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 198 PARGPFHFRAPSKILWKTV 254
P RGPF+ + +I+ +T+
Sbjct: 61 PRRGPFYPKRSDEIVRRTI 79
Score = 39.9 bits (89), Expect = 0.053
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDN 343
RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 80 RGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 52.4 bits (120), Expect = 9e-06
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 204 RGPFHFRAPSKILWKTVEA*SHTKQSVAR 290
+GP+ R P +I +TV K S R
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGR 103
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P K+ RG++A RRLR + G P
Sbjct: 92 RGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 203
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 204 RGPFHFRAPSKILWKTV 254
+GPF+ R P I + V
Sbjct: 74 KGPFYPRRPDLIFRRVV 90
Score = 37.5 bits (83), Expect = 0.28
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P KT+RG+ A +RLR Y G P
Sbjct: 91 RGMLPWKTKRGREAFKRLRAYIGTP 115
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 50.0 bits (114), Expect = 5e-05
Identities = 21/32 (65%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Frame = +3
Query: 408 CHVGRLSHEIGWKYRDVVRKLEDKRKGK-AVK 500
CHVGRLSHE+GWKY+ V+ LE KR+ K A+K
Sbjct: 12 CHVGRLSHEVGWKYQKVIESLEHKRQVKVAIK 43
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/46 (50%), Positives = 34/46 (73%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 140
G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+
Sbjct: 5 GGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
Score = 33.1 bits (72), Expect = 6.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P RG+ AL RLR Y G P
Sbjct: 90 RGMLPKNKARGRRALARLRVYVGVP 114
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 46.8 bits (106), Expect = 5e-04
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK---- 182
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 183 RCNVNPAR-GPFHFRAPSKILWKTVEA*SHTKQSVARMLL 299
R + NP + GP R P ++ + V K R L
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSAL 115
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P K+E G++AL+RLR Y P
Sbjct: 101 RGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 201 ARGPFHFRAPSKILWKTV 254
GP+ + P +IL +T+
Sbjct: 60 EFGPYFPKRPDRILKRTI 77
Score = 34.7 bits (76), Expect = 2.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P+K RG++A+ RL+ Y G P
Sbjct: 78 RGMLPYKRARGRDAMSRLKVYVGVP 102
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 44.0 bits (99), Expect = 0.003
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 194
+ ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG R L +
Sbjct: 8 QVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLF 67
Query: 195 NPAR-GPFHFRAPSKILWKTVEA*SHTKQSVARML 296
NP R G R+P I+ +T+ RML
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLPKSSKGRRML 102
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
I ID H+ GRL++ +AK LL G + +V ++ I+G R + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 201 ARGPFHFRAPSKILWKTV 254
+GP++ + +IL +++
Sbjct: 59 RKGPYYPKTADRILKRSI 76
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 42.3 bits (95), Expect = 0.010
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRK 182
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 183 RCNVNPARGPFHFRAPSKILWKTV------EA*SHTKQSV--ARMLLGGYVHMMGALLP 335
+P +GPF R P IL +TV + S +Q+V R+++G ++ G LP
Sbjct: 64 YKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTPTNLKGEALP 122
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/78 (28%), Positives = 42/78 (53%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R +LGR+++ +A+ +L+G V VV E+ I+G N+ M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 201 ARGPFHFRAPSKILWKTV 254
GP++ + P +I + +
Sbjct: 66 DSGPYYPKRPDRIFKRAI 83
Score = 34.3 bits (75), Expect = 2.6
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P+KTE G+ AL +R Y G P
Sbjct: 84 RGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 41.1 bits (92), Expect = 0.023
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 201 AR-GPFHFRAPSKILWKTV 254
+ GP + R P I+ + +
Sbjct: 62 KKMGPKYPRRPDDIVRRVI 80
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 40.7 bits (91), Expect = 0.030
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDIGN 65
Query: 201 ARGPFHFRAPSKILWKTVEA-*SHTKQ 278
G F+ + P I +T+ H KQ
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQ 92
Score = 33.9 bits (74), Expect = 3.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+PHK +RG+ A +R Y G P
Sbjct: 84 RGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 137
+++D +LGR++ IAK+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 37.1 bits (82), Expect = 0.37
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 426 SHEIGWKYRDVVRKLEDKRKGK 491
+HE+GW+Y+ +V KLE+KRK K
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVK 22
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 36.7 bits (81), Expect = 0.49
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -2
Query: 152 VPKEVARNIDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 12
VP ++ RN HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 36.3 bits (80), Expect = 0.65
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 281 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RG+ AL RL+ Y+G PPP+D L+PG K
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHK 49
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNK 155
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++NK
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK 47
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 259 ASTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRR 80
+S FHR L+W+ R+G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 16 SSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q7NZC0 Cluster: Probable cobalamin biosynthesis
transmembrane protein; n=1; Chromobacterium
violaceum|Rep: Probable cobalamin biosynthesis
transmembrane protein - Chromobacterium violaceum
Length = 306
Score = 33.5 bits (73), Expect = 4.6
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = -2
Query: 635 WL*FLKSLNCIHRNLDDGSEM--VFVAFDTFSPASLVILLSFFSWHSLNS-LALP---LV 474
WL F + N + RNL+ G+E VF PA L+ LL F+S +++ LAL LV
Sbjct: 25 WLLFTRYANHLERNLNAGAERHGVFAWLAAIVPALLLSLLLFYSLKAMSPILALAFNVLV 84
Query: 473 FKLTNNITVFPSNF 432
LT F S F
Sbjct: 85 LYLTMGFRHFSSAF 98
>UniRef50_Q6N2I6 Cluster: Putative uncharacterized protein; n=1;
Rhodopseudomonas palustris|Rep: Putative uncharacterized
protein - Rhodopseudomonas palustris
Length = 1005
Score = 33.5 bits (73), Expect = 4.6
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -2
Query: 572 VFVAFDTFSPASLVILLSFFSWHSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVIYGQ 393
V+V TF+P + +L F L+S + +++ L ITV + +G + G
Sbjct: 671 VYVTSITFAPVVVHLLSQFVFRRELSSSVIDVIYLLVMPITVLAAAIIGVQLFYLAKLGH 730
Query: 392 VLDRRHVEQQALQHVDGY 339
+ D Q AL + G+
Sbjct: 731 LADLSMFFQYALGYAGGF 748
>UniRef50_Q7XVT3 Cluster: OSJNBa0041M21.3 protein; n=3; Oryza
sativa|Rep: OSJNBa0041M21.3 protein - Oryza sativa
subsp. japonica (Rice)
Length = 258
Score = 33.1 bits (72), Expect = 6.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 534 GDPLKFLFMALS*QPCPSSCLQAYEQHHGISIQFHGTVCLH 412
GD F++M PCPS+CL+ Y H IS+Q LH
Sbjct: 50 GDAPSFIYM----WPCPSNCLKPYSAHCYISVQDEMQTNLH 86
>UniRef50_Q22933 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 168
Score = 33.1 bits (72), Expect = 6.1
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = -2
Query: 533 VILLSFFSWHSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVIYGQV 390
V L+ F+S L L + L L NNI VFPSN + +++ MT+ +G++
Sbjct: 6 VFLICFYSISCLTDLDI-LNVALENNILVFPSN-ISEASGMTLFHGRI 51
>UniRef50_P53008 Cluster: Mannosyl-oligosaccharide glucosidase; n=5;
Saccharomycetales|Rep: Mannosyl-oligosaccharide
glucosidase - Saccharomyces cerevisiae (Baker's yeast)
Length = 833
Score = 33.1 bits (72), Expect = 6.1
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 236 LRWSSKMERSTSRI-HVAPLTQE*HKLEFVPKEVARNIDL--FAANHNNFVPFEKDLGDD 66
L W M RS +I HV LTQ+ + + +EV N+DL ++ N N + D DD
Sbjct: 619 LAWVGVMTRSMKQIAHVLKLTQDEQRYAQIEQEVVENLDLLHWSENDNCYCDISIDPEDD 678
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 32.7 bits (71), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCP 328
RGM+P KT RG+ L+ ++ Y G P
Sbjct: 82 RGMLPRKTARGRELLKNVKVYIGVP 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,683,144
Number of Sequences: 1657284
Number of extensions: 13681682
Number of successful extensions: 35539
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 34524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35523
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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