Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30015
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 136 1e-32
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 134 4e-32
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 49 3e-06
11_04_0056 + 12942802-12942920,12943022-12943115 36 0.022
04_03_0232 - 13049649-13052807 33 0.20
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 1.9
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 7.6
07_01_0456 - 3461827-3462261,3462542-3462670,3462777-3462897,346... 28 7.6
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.6
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 136 bits (330), Expect = 1e-32
Identities = 68/164 (41%), Positives = 89/164 (54%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLRK
Sbjct: 6 GLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRK 65
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
R N P+ GP HFRAPS+I W+TV K L G P
Sbjct: 66 RMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVV 125
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C +G+LS E+GW Y D +R+LE+KRK KA
Sbjct: 126 PDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA 169
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 134 bits (325), Expect = 4e-32
Identities = 68/158 (43%), Positives = 88/158 (55%)
Frame = +3
Query: 21 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 200
+V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLRKR N P
Sbjct: 12 VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71
Query: 201 ARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXXXXXX 380
+ GP HFR+P+KILW+TV K L G P
Sbjct: 72 SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131
Query: 381 XXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 494
C +G+LS E+GW Y D +R+LE+KRK KA
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/92 (29%), Positives = 35/92 (38%)
Frame = +3
Query: 189 NVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXXXX 368
N P+ GP HFR+P+KILW+TV K L P
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 369 XXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVR 464
C +G+LS E+GW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG K
Sbjct: 24 RGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHK 73
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 281 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RG+ AL RL+ Y+G PPP+D L+PG K
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHK 49
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 534 GDPLKFLFMALS*QPCPSSCLQAYEQHHGISIQFHGTVCLH 412
GD F++M PCPS+CL+ Y H IS+Q LH
Sbjct: 753 GDAPSFIYM----WPCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 64 QSSPRSFSKGTKLLWFAANKSIFLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLRFY 243
Q+SP + +L WF N ++ + LG C + T +DLS L + Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTV---SELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 244 GRL 252
GRL
Sbjct: 624 GRL 626
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 112 AANKSIFLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHL 234
A+ S+FL G HSC+RG L V+ + E HL
Sbjct: 759 ASTASLFLDLLSGGKYQEYHSCIRGGIFSLCVNSEVQENHL 799
>07_01_0456 -
3461827-3462261,3462542-3462670,3462777-3462897,
3463004-3463086,3463087-3463124,3463219-3464153,
3464407-3464655,3464738-3465195,3465793-3465885,
3466402-3466650
Length = 929
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 557 DTFSPASLVILLSFFSWHSL-NSLALPLVF-KLTNNITVFPSNFMGQSAYMTVIYG 396
D +SL +L+ F S+ N L L K T+ T+ P NF+ + A IYG
Sbjct: 478 DAIHNSSLKVLIWFCSYFKQPNKHVLKLSHSKSTDGFTICPDNFLHEFAMFLSIYG 533
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 60 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 170
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,427
Number of Sequences: 37544
Number of extensions: 400328
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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