Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30015
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 160 7e-40
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 160 7e-40
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 33 0.18
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical ... 29 2.2
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ... 29 2.2
AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical ... 29 2.2
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ... 29 2.2
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr... 28 5.1
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 160 bits (389), Expect = 7e-40
Identities = 82/163 (50%), Positives = 103/163 (63%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
RCN+NPARG FH+RAP KI W+TV K + L + +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKN-LRAYEGVPAKYQKTKSLH 120
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGK 491
C VGRLSHE+GW+++DVV KLE KRK K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGM+PHKT RG AL+ LR Y+G P + F L+P RK
Sbjct: 86 RGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRK 134
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 160 bits (389), Expect = 7e-40
Identities = 82/163 (50%), Positives = 103/163 (63%)
Frame = +3
Query: 3 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 182
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 183 RCNVNPARGPFHFRAPSKILWKTVEA*SHTKQSVARMLLGGYVHMMGALLPLITXXXXXX 362
RCN+NPARG FH+RAP KI W+TV K + L + +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKN-LRAYEGVPAKYQKTKSLH 120
Query: 363 XXXXXXXXXXXXXXXCHVGRLSHEIGWKYRDVVRKLEDKRKGK 491
C VGRLSHE+GW+++DVV KLE KRK K
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVK 163
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = +2
Query: 254 RGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRK 403
RGM+PHKT RG AL+ LR Y+G P + F L+P RK
Sbjct: 86 RGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRK 134
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = -2
Query: 533 VILLSFFSWHSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVIYGQV 390
V L+ F+S L L + L L NNI VFPSN + +++ MT+ +G++
Sbjct: 6 VFLICFYSISCLTDLDI-LNVALENNILVFPSN-ISEASGMTLFHGRI 51
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 492 PCPSSCLQAYEQHHGISIQFHGTVCLHD 409
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2c protein.
Length = 703
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 500 ESAMKRNLRGSPRMLVRKCRRRQTPFHYH 586
E +MK +GSP M++ CR P ++H
Sbjct: 198 EDSMKAYCKGSPEMIMSLCRPETVPENFH 226
>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2b protein.
Length = 1111
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 500 ESAMKRNLRGSPRMLVRKCRRRQTPFHYH 586
E +MK +GSP M++ CR P ++H
Sbjct: 606 EDSMKAYCKGSPEMIMSLCRPETVPENFH 634
>AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2d protein.
Length = 604
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 500 ESAMKRNLRGSPRMLVRKCRRRQTPFHYH 586
E +MK +GSP M++ CR P ++H
Sbjct: 99 EDSMKAYCKGSPEMIMSLCRPETVPENFH 127
>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2a protein.
Length = 1127
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 500 ESAMKRNLRGSPRMLVRKCRRRQTPFHYH 586
E +MK +GSP M++ CR P ++H
Sbjct: 622 EDSMKAYCKGSPEMIMSLCRPETVPENFH 650
>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 547 EKVSKATNTISLPSSKFLWIQFRDLRNYNQK 639
EK SKA +++ + + W++F+ + + N+K
Sbjct: 431 EKFSKAASSVGITDAVMSWVRFKQMDDLNKK 461
>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
protein K12D12.1 protein.
Length = 1520
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 547 EKVSKATNTISLPSSKFLWIQFRDLRNYNQK 639
EK SKA +++ + + W++F+ + + N+K
Sbjct: 431 EKFSKAASSVGITDAVMSWVRFKQMDDLNKK 461
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -2
Query: 635 WL*FLKSLNCIHRNLDDGSEMVFVA----FDTFSPASLVILLSFF 513
WL ++ I+R LD+ + +F + F F P+ L +LSFF
Sbjct: 39 WLVLYYTVLAIYRTLDEERKKIFRSNIEHFINFEPSILTFMLSFF 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,921
Number of Sequences: 27780
Number of extensions: 329166
Number of successful extensions: 885
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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