Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30008
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 60 1e-09
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 60 1e-09
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 60 1e-09
09_04_0707 + 19645471-19646112 51 5e-07
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 33 0.11
12_02_1185 + 26786543-26786545,26786676-26786686,26787032-267872... 33 0.11
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 30 0.80
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 30 0.80
03_02_0920 + 12410551-12410893,12410992-12411095,12411192-124112... 30 0.80
04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370 29 1.8
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 2.4
04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985 28 3.2
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 28 3.2
08_01_0290 - 2335365-2335901 28 4.3
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 4.3
04_03_1017 + 21747044-21748051 27 5.6
02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724 27 5.6
01_05_0278 - 20313373-20313387,20314617-20315240 27 5.6
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 7.4
08_01_1010 - 10215625-10216335,10216372-10216473 27 7.4
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211... 27 7.4
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 7.4
03_01_0116 + 922881-923192,923660-923778,923949-924378 27 7.4
02_05_0593 - 30217432-30218232 27 7.4
02_03_0357 + 18075171-18077240 27 7.4
11_05_0085 - 18963617-18964294 27 9.8
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 27 9.8
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGG+CIGAL+VLADF+GAIGSG
Sbjct: 427 YIPTAAAFGGVCIGALTVLADFMGAIGSG 455
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQA-EMG 165
G GTGILLAVTIIYQYFE F KE+A E+G
Sbjct: 450 GAIGSGTGILLAVTIIYQYFETFEKERATELG 481
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGG+CIGAL+VLADF+GAIGSG
Sbjct: 427 YIPTAAAFGGVCIGALTVLADFMGAIGSG 455
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQA-EMG 165
G GTGILLAVTIIYQYFE F KE+A E+G
Sbjct: 450 GAIGSGTGILLAVTIIYQYFETFEKERATELG 481
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/29 (89%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGG+CIGAL+VLADF+GAIGSG
Sbjct: 417 YIPTAAAFGGVCIGALTVLADFMGAIGSG 445
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQA-EMG 165
G GTGILLAVTIIYQYFE F KE+A E+G
Sbjct: 440 GAIGSGTGILLAVTIIYQYFETFEKERATELG 471
>09_04_0707 + 19645471-19646112
Length = 213
Score = 50.8 bits (116), Expect = 5e-07
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YI TAAA GGLC+GAL++LAD GAIGSG
Sbjct: 164 YISTAAALGGLCVGALTILADMTGAIGSG 192
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 70 SGPSAPGTGILLAVTIIYQYFEIFVKEQ 153
+G GTGILLA T++Y + F KE+
Sbjct: 186 TGAIGSGTGILLAATVVYNLIDAFQKEE 213
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIG 83
Y+ AA F G C+G LS+LA FLG G
Sbjct: 376 YMTIAAIFVGFCVGFLSLLAGFLGLDG 402
>12_02_1185 +
26786543-26786545,26786676-26786686,26787032-26787262,
26787892-26788012,26788263-26788393,26788718-26788760,
26788963-26789220
Length = 265
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
Y+ AA G+C+G L++LA F+G GSG
Sbjct: 210 YMTMAAYIVGICVGLLNLLAGFMGLGGSG 238
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 30.3 bits (65), Expect = 0.80
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 6 IPTAAAFGGLCIGALSVLADFLGAIG 83
I AAA GG +G L+V A +GAIG
Sbjct: 427 IAAAAAVGGFAVGGLAVYAGAVGAIG 452
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
++ AA GG C G L + AD +G SG
Sbjct: 396 HVMRAACVGGFCAGVLIIFADLIGVFCSG 424
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Frame = +1
Query: 10 RRRPRSEDCASGLCQ----CWPTSSGPSAPGTGILLAVTIIYQYFEIFVKEQAEMG 165
RR C G C + G GTGI+LAVT Y Y + E G
Sbjct: 394 RRHVMRAACVGGFCAGVLIIFADLIGVFCSGTGIMLAVTASYPYVDGRASEVGSFG 449
>03_02_0920 +
12410551-12410893,12410992-12411095,12411192-12411297,
12411388-12411607,12411733-12411917,12411988-12412103,
12412208-12412279,12412551-12412598
Length = 397
Score = 30.3 bits (65), Expect = 0.80
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -1
Query: 312 DVFTSNTTRYENVHLMMSIRAETTIKTELNAAVRLPLSLRDLEEQCAHAAHLRLFLDKDL 133
+VF SN Y + ++++ TTI E+ A V+ + + L + +D D
Sbjct: 254 EVFESNLDEYLDARKGVNLQKSTTIFAEIMAGVK---EIHEAGIIHRDLKPLNILIDSDD 310
Query: 132 EVLVND---GDGEQYPSARSRWPRG 67
+ + D + YPSA R+P G
Sbjct: 311 HIYITDFGISKIKPYPSANVRYPGG 335
>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
Length = 321
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 18 AAFGGLCIGALSVLADFLGAIGSGHWDTARRHHHLPVL 131
AA G +GA LAD + G+GHW RHHH +L
Sbjct: 265 AAHGSSRVGA-ERLADSPES-GNGHWIHPSRHHHRQIL 300
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 88 PEPMAPRKSASTDRAPMHSPPNAAAV 11
P+P PR A D+AP+ P AAV
Sbjct: 190 PQPPPPRNQAQADKAPIPVAPPGAAV 215
>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
Length = 773
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -1
Query: 255 RAETTIKTELNAAVRLPLSLRDLEEQCAHAAHLRLFLDKDLEVLVNDGDGEQYPSARSRW 76
+A T + +++ A L+L+ A FLDKD +V + GDG +
Sbjct: 195 KACCTTEMQMDGAQEFNLTLKPSGNVEASTCSAVFFLDKDEQVFTSAGDGRNMALKEALV 254
Query: 75 PRGSR 61
P G R
Sbjct: 255 PLGYR 259
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 88 PEPMAPRKSASTDRAPMHSPP 26
PEP+ PR A P+H PP
Sbjct: 83 PEPLPPRTDAPMPEIPIHPPP 103
>08_01_0290 - 2335365-2335901
Length = 178
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 58 WPTSSGPSAPGTGILLAVTIIYQYFEIFVKEQAEMGG 168
WP ++ PSAPG A +++Y + GG
Sbjct: 98 WPLATDPSAPGAARAAAQACVHKYRDARAAADGRRGG 134
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -3
Query: 439 ISYKLAHHPRTRRHAHNTTPVGALPSTQQILNLKSNFFDKVQRCIHIQHYQI*KRTPNDV 260
+S L P RRH GA +T+ L+ ++ ++ I + +R+P
Sbjct: 216 LSVNLVPPPLARRHGSQRGGRGAATTTK--LSSSTDVAATIRSSIRPSSREFMERSPRRA 273
Query: 259 DSSRNDNKNGAE 224
+ ND K GA+
Sbjct: 274 GEAENDRKEGAD 285
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 109 RRAVSQCPEPMAP-RKSASTDRAPMHSPPNAAA 14
RRA S P P R++AS D PM SPP AA
Sbjct: 214 RRAASPDYSPSTPPRRAASPDYTPM-SPPRRAA 245
>02_05_0289 + 27567549-27567830,27568166-27568284,27569295-27569724
Length = 276
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 VELKAALLPA*CC-VRGGACVDDVLIY 432
++LK ++L C +GG CVD VLIY
Sbjct: 236 MKLKFSMLQIDCTHTKGGLCVDSVLIY 262
>01_05_0278 - 20313373-20313387,20314617-20315240
Length = 212
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 97 SQCPEPMAPRKSASTDRAPMHSPPNAAAVG 8
S P P +P +S + + MH PP+ AA G
Sbjct: 7 SPFPPPPSPAESNAPSASAMHHPPHPAAGG 36
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 94 QCPEPMAPRKSASTDRAPMHSP 29
Q PEP A +++ST +P H P
Sbjct: 11 QRPEPQAKEENSSTSASPSHDP 32
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 82 PMAPRKSASTDRAPMHSPPNAAA 14
P PR++AS D P PP AA+
Sbjct: 108 PTPPRRAASPDYTPSTPPPRAAS 130
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 82 PMAPRKSASTDRAPMHSPPNAAA 14
P PR++AS D P PP AA+
Sbjct: 168 PTPPRRAASLDYTPSTPPPRAAS 190
>06_03_1114 +
27719099-27719252,27719340-27719570,27720508-27721148,
27721225-27722124
Length = 641
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 132 EVLVNDGDGEQYPSARSRWPRGSRPALTEPRCTVLRTR 19
++ ++DG+ + ARSRW + TE +V+R R
Sbjct: 519 DLFLDDGESPEMVGARSRWSQIKFSGATESGGSVVRVR 556
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 115 W*RRAVSQCPEPMAPRKSASTDRAPMHSPPNAAAVGM 5
W +R+VS P P + SAST +P + + G+
Sbjct: 3 WWKRSVSPSPSPSSSSASASTPASPARASTSRVGGGV 39
>03_01_0116 + 922881-923192,923660-923778,923949-924378
Length = 286
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 355 VELKAALLPA*CC-VRGGACVDDVLIY 432
++LK +L C +GG CVD VLIY
Sbjct: 246 IKLKFSLAQIDCTHTKGGLCVDSVLIY 272
>02_05_0593 - 30217432-30218232
Length = 266
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 97 SQCPEPMAPRKSASTDRAPMHSPPNAAA 14
++ P K STD + H PPNA A
Sbjct: 177 AEAPSSATESKPNSTDASSKHGPPNAGA 204
>02_03_0357 + 18075171-18077240
Length = 689
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 120 LPVLRDLCQGTSGDG 164
+P ++DLC G+SGDG
Sbjct: 379 IPEMKDLCLGSSGDG 393
>11_05_0085 - 18963617-18964294
Length = 225
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 262 VDSSRNDNKNGAE--RSGPTAAIITRLRRAVCSCRPSPLVP 146
+D+ D ++G +GP ++T L R V + RP P +P
Sbjct: 97 LDAVVRDTEDGVPVPATGPRITLLTELARDVSTQRPPPFLP 137
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 14 GGRVRRTVHRGSVSAGRLPRGHRLR 88
G R+ R V R + S+ +LP G RLR
Sbjct: 28 GRRMARLVTRAAASSPKLPSGRRLR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,207
Number of Sequences: 37544
Number of extensions: 283710
Number of successful extensions: 1157
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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