Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30008
(465 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 64 3e-10
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 64 3e-10
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 64 3e-10
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 63 5e-10
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 63 5e-10
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 63 5e-10
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 63 5e-10
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 63 5e-10
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 63 5e-10
AK123191-1|BAC85553.1| 221|Homo sapiens protein ( Homo sapiens ... 29 6.0
AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar t... 29 7.9
AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar t... 29 7.9
AK074121-1|BAB84947.1| 491|Homo sapiens FLJ00193 protein protein. 29 7.9
AF063709-1|AAC16790.1| 108|Homo sapiens immunoglobulin lambda l... 29 7.9
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 197 GAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 174 YIPTAAAFGGLCIGALSVLADFLGAIGSG 202
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 197 GAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 174 YIPTAAAFGGLCIGALSVLADFLGAIGSG 202
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 439 GAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 416 YIPTAAAFGGLCIGALSVLADFLGAIGSG 444
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 155 YIPTAAAFGGLCIGALSVLADFLGAIGSG 183
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 178 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 215
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 110 YIPTAAAFGGLCIGALSVLADFLGAIGSG 138
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 133 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 296 YIPTAAAFGGLCIGALSVLADFLGAIGSG 324
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 319 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 356
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 110 YIPTAAAFGGLCIGALSVLADFLGAIGSG 138
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 133 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 416 YIPTAAAFGGLCIGALSVLADFLGAIGSG 444
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 439 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 62.9 bits (146), Expect = 5e-10
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSG 89
YIPTAAAFGGLCIGALSVLADFLGAIGSG
Sbjct: 416 YIPTAAAFGGLCIGALSVLADFLGAIGSG 444
Score = 61.7 bits (143), Expect = 1e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1
Query: 73 GPSAPGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 186
G GTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 439 GAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AK123191-1|BAC85553.1| 221|Homo sapiens protein ( Homo sapiens
cDNA FLJ41197 fis, clone BRACE2045947. ).
Length = 221
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 94 QCPEPMAPRKSASTDRAPMHSPPNAAAVG 8
QCP P PR+S ST P +PP A G
Sbjct: 127 QCPWPSEPRRS-STPSRPSSTPPRPAGQG 154
>AL356104-4|CAH72941.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSGHWDTARRHHHLPV 128
Y A G +G+L V L IG HW + HHHL V
Sbjct: 752 YNSLGAVIGIAVLGSLVVALVAL-FIGYRHWQKGKEHHHLAV 792
>AL158169-5|CAH70011.1| 1037|Homo sapiens novel protein similar to
mouse Jedi soluble isoform 736 protein protein.
Length = 1037
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSGHWDTARRHHHLPV 128
Y A G +G+L V L IG HW + HHHL V
Sbjct: 752 YNSLGAVIGIAVLGSLVVALVAL-FIGYRHWQKGKEHHHLAV 792
>AK074121-1|BAB84947.1| 491|Homo sapiens FLJ00193 protein protein.
Length = 491
Score = 29.1 bits (62), Expect = 7.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 3 YIPTAAAFGGLCIGALSVLADFLGAIGSGHWDTARRHHHLPV 128
Y A G +G+L V L IG HW + HHHL V
Sbjct: 206 YNSLGAVIGIAVLGSLVVALVAL-FIGYRHWQKGKEHHHLAV 246
>AF063709-1|AAC16790.1| 108|Homo sapiens immunoglobulin lambda
light chain variable region protein.
Length = 108
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 16 RPRSEDCASGLCQCWPTSSGPSAPGTGILLAV 111
R + D A CQ W TSS P GTG ++V
Sbjct: 76 RVEAGDEADYYCQVWDTSSDPDVFGTGTKVSV 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,588,657
Number of Sequences: 237096
Number of extensions: 1405244
Number of successful extensions: 4705
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4705
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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