Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30007
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-15|ABF71716.1| 152|Caenorhabditis elegans Hypothetical... 29 3.8
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 29 5.1
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 29 5.1
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 29 5.1
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 6.7
Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 28 8.9
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 28 8.9
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 28 8.9
>AC087079-15|ABF71716.1| 152|Caenorhabditis elegans Hypothetical
protein Y37E3.19 protein.
Length = 152
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Frame = +3
Query: 348 HYAAPVAKVIAPAHKVLVSAHHE----EEYAHPKYDFAYSVADGHSGDNK--SQHESRDG 509
H+ P K P +L H + E++ V HS D + S + D
Sbjct: 56 HFTPPHIKTAVPTRSLLRQKHQQCPVHYEFSEDATTTTTFVDSAHSSDIQFDSTQSASDS 115
Query: 510 TL-----CTASTLWLKLTVQCARLSTPLTTTTAFNAI 605
++ CT ++ QC +T TTTT+F I
Sbjct: 116 SISFLKRCTCFCAQKRVRFQCPPTTTTTTTTTSFGFI 152
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 495 ESRDG 509
S +G
Sbjct: 1564 GSENG 1568
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 495 ESRDG 509
S +G
Sbjct: 1602 GSENG 1606
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 495 ESRDG 509
S +G
Sbjct: 1564 GSENG 1568
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 309 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 407
+ AAAP A+P AP A ++AP VL +A
Sbjct: 55 VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87
>Z29121-1|CAA82387.3| 324|Caenorhabditis elegans Hypothetical
protein ZK757.1 protein.
Length = 324
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 528 TLWLKLTVQCARLSTPLTTTTAFNAIVSN 614
++WL +++ C +S L T FNA SN
Sbjct: 270 SVWLHVSLVCNNISFSLADTNLFNAFTSN 298
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 515 VHGEYTLVEADGSVRKVEYTADDHHGFQRYRQQ 613
VHG+ L EA+GS R + AD + + R R Q
Sbjct: 18 VHGQLRLCEAEGSCR---HCADSRYSYYRCRMQ 47
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 450 YSVADGHSGDNKSQHESRDGTLCTASTLWLKLTV-QCARLSTPL 578
YS+A G+ GD K H+SR G + L T+ R ++P+
Sbjct: 452 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPI 495
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 450 YSVADGHSGDNKSQHESRDGTLCTASTLWLKLTV-QCARLSTPL 578
YS+A G+ GD K H+SR G + L T+ R ++P+
Sbjct: 253 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPI 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,579
Number of Sequences: 27780
Number of extensions: 175356
Number of successful extensions: 596
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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