Silkworm BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30002
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.85 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.5  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.5  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 456 IPRYKIKVVQTDKILLALVMELGAFIS 536
           IP     +   D++LLAL  +LG+FI+
Sbjct: 54  IPFLTETIYDEDEVLLALAEQLGSFIT 80


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 212 TLVFKYQWCILPFKLSTDW 268
           T+V  +  C+LPF+  T W
Sbjct: 296 TVVLAFFICLLPFRALTFW 314


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 391 YGYYALKFFKNCC*TLWIL 335
           +GYY +    NC  +LW +
Sbjct: 209 FGYYHILAMLNCLCSLWFI 227


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 391 YGYYALKFFKNCC*TLWIL 335
           +GYY +    NC  +LW +
Sbjct: 209 FGYYHILAMLNCLCSLWFI 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,894
Number of Sequences: 336
Number of extensions: 3653
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)