Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30001
(833 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 44 8e-06
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 36 0.002
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 31 0.043
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 29 0.17
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p... 29 0.17
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 29 0.23
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh... 26 1.2
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 26 1.2
Z69979-1|CAA93819.1| 127|Anopheles gambiae vacuolar ATPase prot... 24 5.0
AY748834-1|AAV28182.1| 171|Anopheles gambiae cytochrome P450 pr... 24 6.6
DQ383819-1|ABD38144.1| 377|Anopheles gambiae abdominal-B protein. 23 8.7
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 23 8.7
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 43.6 bits (98), Expect = 8e-06
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -1
Query: 707 LKQRGIPNKIIGIIQALYRGSTCRVVHDQVLGAPIEMTAGVKQGCLLSPLLFIMLLDDI 531
L + G + II + + +CRV L T+GV QGC+LSPLLF + ++D+
Sbjct: 632 LSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSGVPQGCVLSPLLFSLFINDV 690
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 35.5 bits (78), Expect = 0.002
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -1
Query: 707 LKQRGIPNKIIGIIQALYRGSTCRVVHDQVLGAPIEMTAGVKQGCLLSPLLFIMLLDDI 531
L + GIP+ ++ +++ T V D+ + I ++GV QG + PLLFI+ ++D+
Sbjct: 703 LDKLGIPSPLVQWLKSYLIHRTYIVKIDKHMSKEIVSSSGVPQGSNIGPLLFILFINDV 761
Score = 26.2 bits (55), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 132 LFDSIVKSVLLFGCETWR-VTKTLTNRLQVFVNKCLRSILRI 10
+++ IV+SVL + C W T + R++ K R LR+
Sbjct: 891 VYNCIVRSVLEYSCVVWSPTTASSIARIEAIQRKLTRYALRL 932
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 31.1 bits (67), Expect = 0.043
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = -1
Query: 716 GPCLKQRGIPNKIIGIIQALYRGSTCRVVHDQVLGAPIEMTAGVKQGCLLSPLLFIMLLD 537
G L++ P +++ + G T D+ + + ++AGV QG +L P L+ ++ D
Sbjct: 579 GQALQRENTPPYFQALLRNYFVGRTLHYDTDEKVVSRT-VSAGVPQGSVLGPTLWNVMYD 637
Query: 536 DIMR 525
D++R
Sbjct: 638 DLLR 641
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 29.1 bits (62), Expect = 0.17
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Frame = -3
Query: 477 EDLDYADDIVLMTPTLD--QMQAKLEDLRISAE----KRGLRINTNKTVDMRVMS-KNTT 319
E + YADD+VL+ P +D ++A E+ S + L+I KT + + S KN T
Sbjct: 721 EMVAYADDLVLLIPGIDVNAVKAAAEEAVASVSHWMAQHHLQIAPEKTECVLISSTKNPT 780
Query: 318 PLKLQDCGFEVS---TEVYISGELLSNQGGSDEDIEIRIRKARGAFAQLKPVWESSVMTR 148
+ ++ EV+ T Y+ L + E+ R + A A + + S +
Sbjct: 781 QVTIRVGDVEVTSSRTMRYLGVTLHDHLSWLPHVREVTTRARKIADAVTRLLRNHS-GPK 839
Query: 147 RIKLTLFDSIVKSVLLFGCETW--RVTKTLTNRLQVFVNK-CLRSILRIF 7
K L S+ +SV+ + W VTK RL V + R + R F
Sbjct: 840 TSKARLLASVAESVIRYAAPIWHGEVTKRECRRLLERVQRVSARRVARTF 889
>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
protein.
Length = 1077
Score = 29.1 bits (62), Expect = 0.17
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -1
Query: 680 IIGIIQALYRGSTCRVVHDQVLGAPIEMTAGVKQGCLLSPLLFIMLLDDIM 528
++G+++ S+ R++ + L PI + V+QG LS LFI+ L ++
Sbjct: 616 LVGLLRRFGDQSSSRILVNGSLSPPISIRRSVRQGDPLSMHLFILYLHPLI 666
Score = 28.3 bits (60), Expect = 0.30
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 465 YADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMRV 337
YADDI ++T + +++ E G R+N +KT+ + V
Sbjct: 683 YADDISVVTTSSQKIELVREAFEAFGRVSGARLNVDKTIALDV 725
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 28.7 bits (61), Expect = 0.23
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = -3
Query: 477 EDLDYADDIVLMTP--TLDQMQAKLEDLRISA----EKRGLRINTNKTVDMRVMSKNTTP 316
E L YADD+VL+ P T D ++A E+ IS + L + KT +M V+S P
Sbjct: 654 EILGYADDLVLLVPGTTPDNVKAAAEEAIISVMEWMARHHLELAPAKT-EMVVISSTKAP 712
Query: 315 LKL 307
++
Sbjct: 713 TRI 715
>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adhesion
protein protein.
Length = 1881
Score = 26.2 bits (55), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 456 DIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMRV 337
++ L P LD+ Q + DLRI A +G+ + TVD+ V
Sbjct: 1338 ELSLAAP-LDREQQMMYDLRIEAYDQGIPTPLSSTVDLIV 1376
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 26.2 bits (55), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 516 DNTRGIEWSENILEDLDYADDIVLMTP-TLDQMQAKLEDLRISAEKRGLR 370
D G+E E + YADD+VL+ P T A + + +SA R LR
Sbjct: 656 DGVLGVELPPGA-ELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLR 704
>Z69979-1|CAA93819.1| 127|Anopheles gambiae vacuolar ATPase
protein.
Length = 127
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 369 INTNKTVDMRVMSKNTTPLKLQDC 298
IN N+ + V+ KNT +++DC
Sbjct: 32 INKNRHPNFMVVDKNTAVSEIEDC 55
>AY748834-1|AAV28182.1| 171|Anopheles gambiae cytochrome P450
protein.
Length = 171
Score = 23.8 bits (49), Expect = 6.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 415 CLHLIQSWRHQHYVICIVKVFQDIFAP 495
CLH + + + HY+ ++K +F P
Sbjct: 28 CLHTLSALNNLHYMELVIKESLRLFPP 54
>DQ383819-1|ABD38144.1| 377|Anopheles gambiae abdominal-B protein.
Length = 377
Score = 23.4 bits (48), Expect = 8.7
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 4 PEYAEYRPQALIYKYLQPVRECLGHSPGFTSEKENTLDNGV 126
P Y +Y P A I + R G P S E+ +G+
Sbjct: 191 PYYPKYEPDAYITASTERSRGVTGDQPSLQSSYESYNSSGL 231
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 695 GIPNKIIGIIQALYRGSTCRVVHD 624
GIPN + + Y G CRV D
Sbjct: 457 GIPNAAVKVAIEKYPGVFCRVYQD 480
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,852
Number of Sequences: 2352
Number of extensions: 20183
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -