Silkworm BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0032
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208808-1|BAD92045.1|  179|Homo sapiens TNFRSF14 protein varian...    33   0.88 

>AB208808-1|BAD92045.1|  179|Homo sapiens TNFRSF14 protein variant
           protein.
          Length = 179

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 307 RTSHPLE-AAADRRNPQVRRQGPXDVSAQSFCSARSYAPTRLSTSSTSPILMS 462
           RT HPL  A   +  P   R GP  +S  + C  R     R  ++S SP+ +S
Sbjct: 121 RTLHPLSMATVPQEGPGCPRPGPNPISMDAPCRGRLEVSLRPPSTSVSPLTLS 173


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,627,576
Number of Sequences: 237096
Number of extensions: 1158246
Number of successful extensions: 2541
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2541
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)