Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0029
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_21315| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092) 30 1.2
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21) 29 2.8
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 4.9
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 6.5
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06) 27 6.5
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 31.9 bits (69), Expect = 0.30
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 401 PTSEPRQRTASRALEDRGATYAERSSTRALRPYSSEERRSGTET 270
P S P++RT+S A G A +S + YS+E SG+E+
Sbjct: 867 PRSPPKRRTSSEAFYTEGLPLAPSTSLTSSSAYSTEGLASGSES 910
>SB_21315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 30.3 bits (65), Expect = 0.92
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = -3
Query: 461 NEKHRSNSELQY*AASRRH----FPTSEPRQRTASRALEDRG---ATYAERSSTRALRPY 303
N + R S Y RR + T + RQ AS + +DR A+Y+ + +++ Y
Sbjct: 29 NTQDRRQSMASYNTQDRRQSMASYSTQDRRQSMASYSTQDRRQSMASYSTQDRRQSMASY 88
Query: 302 SSEERRSGTETA*LQTPSQFSFGY 231
S+++RR + Q +F Y
Sbjct: 89 STQDRRQSMASYNTQDRRRFMASY 112
>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
Length = 783
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 464 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDR 351
E EK+ + EL+ S HF E ++R RA+ED+
Sbjct: 332 EEEKYGKDGELRMLKESLAHFQAEEAKKREQIRAMEDQ 369
>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 426 LSGQSPTFPNIRTTTANSLQSS*RPRCHVRGAKLN 322
L G S FP RT + ++ S RPRC ++N
Sbjct: 456 LLGSSGDFPRKRTNQSQNMTSLPRPRCKATSTRIN 490
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Frame = -2
Query: 354 PRCHVRGAKLNARSTSILVRGA---SLGNGDSVTSNAIAVLIWVWR-----LTDHLTTAS 199
P+C +R K + + + G T ++ W W LTDH TT +
Sbjct: 299 PKCRIRSYKFCLAVAGAIAQTSPDCDFEKGMCYTQDSTDTFDWTWDIANSPLTDHTTTVT 358
Query: 198 NGSDSSSRGTEYSTTC 151
+GS ++ G C
Sbjct: 359 SGSTFTTAGNGQGAPC 374
>SB_18162| Best HMM Match : E-MAP-115 (HMM E-Value=0.21)
Length = 659
Score = 28.7 bits (61), Expect = 2.8
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -3
Query: 470 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGA--TYAERSSTRALRPYSS 297
N E K R+ + L+ A R H R ++ E GA YAERS A R SS
Sbjct: 456 NAEAWKRRAWARLE--AEQRHHEEQQRRRAEELAKLAELAGAHKRYAERSQETARRRRSS 513
Query: 296 EERRSGTETA*LQTPSQF 243
RR+ P Q+
Sbjct: 514 RRRRNKKRLQMGAAPGQY 531
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 284 SDAPLTSMDVERALSFAPRTWHRGLQELWRLFAVVVRMLGNVGDWP 421
SD P+T + LS P + H G E + + + V+ N+GD P
Sbjct: 1715 SDPPITDL----CLSLYPLSMHLGGLEPYTEYVITVKAYTNIGDGP 1756
>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 341 TWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 451
TW G E WRL + G++ W L ++ S G
Sbjct: 63 TWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 99
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 341 TWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 451
TW G E WRL + G++ W L ++ S G
Sbjct: 79 TWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 115
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 317 RALSFAPRTWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRC 442
R L PR W+R + L+ R +GN+ + P++ V RC
Sbjct: 2023 RFLRIHPRNWYRHISMRIELYGKRNRFVGNICNLPMS-VGRC 2063
>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
Length = 259
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
RLT++ +ASNGSD + E ST
Sbjct: 2 RLTNYTLSASNGSDDETSNKEVST 25
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,814
Number of Sequences: 59808
Number of extensions: 260497
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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