Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0029
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 31 0.61
U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate recep... 29 2.5
AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic gl... 29 2.5
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 28 3.3
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 28 3.3
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 28 3.3
Z11126-3|CAA77474.2| 487|Caenorhabditis elegans Hypothetical pr... 27 7.6
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 10.0
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 31.5 bits (68), Expect = 0.35
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEV-TLSPFPSDAPLTSMDVERALSFAPRTWHRGLQELWRLFAVVVR 394
+ +R T R M+ V LS PS TS + A SF P + LQ F VVVR
Sbjct: 1791 AAARRTSPRVPMSSNVPALSSRPSSRMSTSSRISTASSFVPESVAVPLQSTGSAFDVVVR 1850
Query: 395 MLG 403
G
Sbjct: 1851 QSG 1853
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 30.7 bits (66), Expect = 0.61
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = -2
Query: 327 LNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 148
+++ +++I + +S + S T+ A + L + ++T T A NG S G+ +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232
Query: 147 TARRAYSKARMACDTGGKASWLLKAW 70
+ S A K+ L W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258
>U41547-1|AAA83192.2| 489|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 8 protein.
Length = 489
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 EVTLSPFPSDAPLTSMDVERALSFAPRTWH-RGLQELWRLFAVVV 391
E+T++PF S S+ V++ L PR+W R L LW L ++ +
Sbjct: 165 EMTVTPFESIWVFFSIFVQQGLPEQPRSWSCRVLVALWWLASITL 209
>AF318612-1|AAK01100.1| 406|Caenorhabditis elegans ionotropic
glutamate receptor GLR-8 protein.
Length = 406
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 260 EVTLSPFPSDAPLTSMDVERALSFAPRTWH-RGLQELWRLFAVVV 391
E+T++PF S S+ V++ L PR+W R L LW L ++ +
Sbjct: 157 EMTVTPFESIWVFFSIFVQQGLPEQPRSWSCRVLVALWWLASITL 201
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
++ S G SSSRG+ Y T R+++R+ S++R +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSF 331
+ +A T SP PSD S+DV+R L+F
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAF 419
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSF 331
+ +A T SP PSD S+DV+R L+F
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAF 419
>Z11126-3|CAA77474.2| 487|Caenorhabditis elegans Hypothetical
protein ZK643.5 protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -3
Query: 461 NEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATYA-ERSSTRA 315
NE+ R E+ RRH P SE ++ + + A YA + T+A
Sbjct: 356 NEQKRKREEIVRKKEERRHAPVSEKKEVPTTVSTNTSSAAYANSKDKTKA 405
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 227 RHTQMRTAMAFEVTLSPFPSDAPLTSMDVERALSFAPR 340
RHT + +A A + +P P+ AP V RA S P+
Sbjct: 1086 RHTPVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPK 1123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,429,690
Number of Sequences: 27780
Number of extensions: 177800
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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