Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0028
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 29 2.8
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 29 2.8
04_04_0088 + 22723308-22724480 29 2.8
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 29 3.7
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 29 3.7
03_02_0830 + 11611588-11611660,11611720-11611952 28 4.9
07_01_0975 + 8223269-8224354 28 6.5
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 6.5
08_02_1019 - 23657175-23658047 27 8.6
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 8.6
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 178 KCFREGESRRAPSAGPMLPVAAVTRRPRALFHIPTH 285
K F PS+GP L A V+R+PR H H
Sbjct: 111 KLFMAAWENDFPSSGPSLGTAKVSRQPRRQSHFDLH 146
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Frame = -3
Query: 284 WVG--MWNSARGRL--VTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 120
W G +W G++ A+ GS G G L +CVEP +P G+P
Sbjct: 297 WTGPEIWKDTAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPG 356
Query: 119 MSPQKGSPA 93
+G+ A
Sbjct: 357 PHKIQGTGA 365
>04_04_0088 + 22723308-22724480
Length = 390
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 97 GDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRPRALFHI 276
G PF DG L R + P + +R+CF + R+ GP P+ + RRP + H+
Sbjct: 78 GPPFIIGADGAFLVIRVIFP--CRSDRRCFTDFFVYRS---GPGTPLLELLRRPYPVKHL 132
Query: 277 PTH 285
H
Sbjct: 133 SDH 135
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Frame = -3
Query: 284 WVG--MWNSARGR--LVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPS 120
W G +W G+ + A +G+ G G L ICVEP +P G PS
Sbjct: 179 WTGPEIWKDTAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPS 238
Query: 119 MSPQKG-SPASQPYTL 75
+G P P L
Sbjct: 239 RHKIQGMGPGFVPKNL 254
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 254 RLVTAATGSMGPADGALLLSPSRKHFL 174
R V A + S+GP D + L P KHFL
Sbjct: 846 RFVVACSESIGPVDTFVYLFPHLKHFL 872
>03_02_0830 + 11611588-11611660,11611720-11611952
Length = 101
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 291 LMMGRYVEQCARSSSHR---RYRQHGSSGWRSPALAFTETLPVYLC 163
L+ GRY+ A +S H R R G+ PA++ LP++LC
Sbjct: 3 LLWGRYMCTSALASCHTDPMRARSTGALITEQPAVSLISNLPLHLC 48
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 245 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 84
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 130 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 240
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>08_02_1019 - 23657175-23658047
Length = 290
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 184 FREGESRRAPSAGPMLPVAAVTRRPRALFHIPTHHQL-P*IRSPAAVEHSQQ 336
F ES GP P +AV+ + + HHQ P R+PA H QQ
Sbjct: 108 FHRKESESPTGVGPAEP-SAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQ 158
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 155 GSTPRCPSGTPSMSPQKGSPASQP 84
GS+PRC S M Q+ SP S P
Sbjct: 307 GSSPRCASPEKIMGSQERSPRSSP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,384
Number of Sequences: 37544
Number of extensions: 341713
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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