Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0027
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical ... 30 0.81
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 29 1.9
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 29 1.9
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 27 4.3
Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical p... 27 5.7
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 26 10.0
AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear recep... 26 10.0
AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear recep... 26 10.0
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 26 10.0
AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormo... 26 10.0
>AF025472-3|AAB71075.2| 843|Caenorhabditis elegans Hypothetical
protein ZK250.6 protein.
Length = 843
Score = 29.9 bits (64), Expect = 0.81
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 246 MIFKRTP*IYSLILICNLITALRLNNKTFNFKYNLKLMS 362
++ KR + L L C T+ R+NN + KY LKLMS
Sbjct: 437 LVIKRKDGFFKLFLRCYKKTS-RINNWSIGVKYTLKLMS 474
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 108 EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 224
E C S + L EN KN P RH+Q+G D+ +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 108 EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 224
E C S + L EN KN P RH+Q+G D+ +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 106 KPAPERRRRIGSLRNSL*VYLNSNADVKTQAA 11
KPAPE+ SL N L V N+ ++K Q A
Sbjct: 407 KPAPEQPVNASSLHNELRVISNAICELKAQQA 438
>Z30423-10|CAA83014.1| 216|Caenorhabditis elegans Hypothetical
protein T20G5.12 protein.
Length = 216
Score = 27.1 bits (57), Expect = 5.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 75 PILRLRSGAGFEHDQCCSRAQVE 143
P ++ + G +H QCCS++QV+
Sbjct: 129 PEMQFCAAQGKDHSQCCSQSQVD 151
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 222 EDLDRRARFDDAVTDVPAHFFNFLEDLPPGLGSS 121
E +R R+ D+P F N L LPP L S
Sbjct: 265 ESFERHVRYVSPYKDMPLRFANLLLLLPPMLAIS 298
>AY204173-1|AAO39177.1| 369|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 369
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 222 EDLDRRARFDDAVTDVPAHFFNFLEDLPPGLGSS 121
E +R R+ D+P F N L LPP L S
Sbjct: 290 ESFERHVRYVSPYKDMPLRFANLLLLLPPMLAIS 323
>AY204172-1|AAO39176.1| 234|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 234
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 222 EDLDRRARFDDAVTDVPAHFFNFLEDLPPGLGSS 121
E +R R+ D+P F N L LPP L S
Sbjct: 155 ESFERHVRYVSPYKDMPLRFANLLLLLPPMLAIS 188
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 222 EDLDRRARFDDAVTDVPAHFFNFLEDLPPGLGSS 121
E +R R+ D+P F N L LPP L S
Sbjct: 308 ESFERHVRYVSPYKDMPLRFANLLLLLPPMLAIS 341
>AF043694-1|AAC24283.1| 412|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform a protein.
Length = 412
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 222 EDLDRRARFDDAVTDVPAHFFNFLEDLPPGLGSS 121
E +R R+ D+P F N L LPP L S
Sbjct: 333 ESFERHVRYVSPYKDMPLRFANLLLLLPPMLAIS 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,143
Number of Sequences: 27780
Number of extensions: 174829
Number of successful extensions: 430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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